Browse Element(s) Details


Os.11879.1.S1_at

Description gb:AK071406.1
DB_XREF= gi:32981429
TID=Os.11879.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11879 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092H13, full insert sequence.
FL= gb:AK071406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2938011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29330OsAffx.22940.2.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.1.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_x_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.3.S1_x_at9/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.2.S1_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.3.S1_x_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.18.S1_x_at6/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.31552.2.S1_at1/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29340Os.25221.1.S1_at11/112+17422161..17425495HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g29350OsAffx.12270.1.S1_at9/112+17429981..17431271hypothetical protein
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein
LOC_Os02g29370NANA2+17437564..17439723transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g29380Os.11879.1.S1_at11/112+17440484..17449287expressed protein
LOC_Os02g29390OsAffx.12271.1.S1_at11/112+17450426..17451311hypothetical protein
LOC_Os02g29390OsAffx.2664.1.S1_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29390Os.52777.1.S1_s_at1/112+17450426..17451311hypothetical protein
LOC_Os02g29400Os.6440.1.S1_at11/112+17458157..17458759Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g29410OsAffx.30515.3.S1_at9/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.4.S1_x_at4/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.1.S1_x_at3/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29410OsAffx.30515.2.S1_x_at2/112+17459494..17467741hAT family dimerisation domain containing protein
LOC_Os02g29420OsAffx.24493.1.S1_at11/112+17472302..17475239hypothetical protein
LOC_Os02g29420OsAffx.16522.1.S1_at1/112+17472302..17475239hypothetical protein
LOC_Os02g29420Os.38764.1.S1_x_at1/112+17472302..17475239hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0006284biological_processbase-excision repair
GO:0006342biological_processchromatin silencing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003906molecular_functionDNA-(apurinic or apyrimidinic site) lyase activity
GO:0019104molecular_functionDNA N-glycosylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11879.1.S1_at--230--7851Chr02:17447910..17447934 (25 bp)
GGTACCTACTTTCAGGATCATGAGG
LOC_Os02g29380
Os.11879.1.S1_at--154--9051Chr02:17448057..17448081 (25 bp)
TGCAGATCATTCATCTAGCCGTTCC
LOC_Os02g29380
Os.11879.1.S1_at--1136--10451Chr02:17448086..17448110 (25 bp)
TTACCATCCCTAGAGAATGCATCTG
LOC_Os02g29380
Os.11879.1.S1_at--136--4951Chr02:17448125..17448149 (25 bp)
GCATTGTATATTTTGGCTCGTCGAT
LOC_Os02g29380
Os.11879.1.S1_at--731--8851Chr02:17449009..17449033 (25 bp)
TGATGACAAATCTTCCTTTGGCAAA
LOC_Os02g29380
Os.11879.1.S1_at--183--8211Chr02:17449093..17449117 (25 bp)
GGAAGGATGCTGATAGCCTCTGCTA
LOC_Os02g29380
Os.11879.1.S1_at--152--4471Chr02:17449108..17449132 (25 bp)
GCCTCTGCTAGCTCTAGTGTATCAT
LOC_Os02g29380
Os.11879.1.S1_at--198--4891Chr02:17449149..17449173 (25 bp)
GCTTAGGGCGGCTGCATGAGTAAAT
LOC_Os02g29380
Os.11879.1.S1_at--1091--8551Chr02:17449177..17449201 (25 bp)
TGGTTGAGATCTCTTCCACAATGCG
LOC_Os02g29380
Os.11879.1.S1_at--950--3191Chr02:17449195..17449219 (25 bp)
CAATGCGCCTTGTATATTAGTCAAA
LOC_Os02g29380
Os.11879.1.S1_at--1161--2391Chr02:17449244..17449268 (25 bp)
AAACATCCCATCTTTTATGAGGCAA
LOC_Os02g29380
Target Sequence 
GGTACCTACTTTCAGGATCATGAGGTTTTTGCAGATCATTCATCTAGCCGTTCCCCGATTACCATCCCTAGAGAATGCAT
CTGGAACCTAGATAGATGCATTGTATATTTTGGCTCGTCGATACAATCGATCATGAAAGGTCAAACAAGGCAAGACATTG
AGGACTGCTACAAGAAAGGATATATTTGTGTTAGAGGATTTGATCGGNATACAAGATACCCAAAGCCAATATGTGCAAAA
TTACACGCCACCAATGAAAGGNACGGAACAGGTGAAAATAGCCGGAAGAAGAAAAAGNCATCACAAGAGGGGAAGAAGAT
TGATGACAAATCTTCCTTTGGCAAATTAGAAATTAACTGATATATATATATCACCATTNACAAAGTTGTGTACAAATTGT
AGTTGGAAGGATGCTGATAGCCTCTGCTAGCTCTAGTGTATCATGTAGATCAGTAGATTTGCTTAGGGCGGCTGCATGAG
TAAATATTTGGTTGAGATCTCTTCCACAATGCGCCTTGTATATTAGTCAAATTCCTTTTTTATTATGTGTAAACAAAACA
TCCCATCTTTTATGAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis