Browse Element(s) Details


OsAffx.27913.1.S1_at

Description tigr:9634.m03130
TID=OsAffx.27913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Avr9Cf-9 rapidly elicited protein 194
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3339011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33340Os.49603.1.S1_at11/116+19417815..19420857expressed protein
LOC_Os06g33340Os.16076.1.S1_s_at11/116+19417815..19420857expressed protein
LOC_Os06g33350Os.56283.1.S1_at11/116+19426546..19430026expressed protein
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein
LOC_Os06g33400OsAffx.27914.1.S1_at11/116+19447322..19447750hypothetical protein
LOC_Os06g33410OsAffx.27915.1.S1_at8/116+19453210..19454390hypothetical protein
LOC_Os06g33420OsAffx.15712.1.S1_at10/116+19456390..19459812transposase, putative
LOC_Os06g33430NANA6+19466522..19472679retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27913.1.S1_at--622--5071Chr06:19445232..19445256 (25 bp)
GCAGCGGATGGTCGTCATCATCACA
LOC_Os06g33390
OsAffx.27913.1.S1_at--995--811Chr06:19445225..19445249 (25 bp)
ATGGTCGTCATCATCACAAGGCGGT
LOC_Os06g33390
OsAffx.27913.1.S1_at--421--7211Chr06:19445222..19445246 (25 bp)
GTCGTCATCATCACAAGGCGGTTGT
LOC_Os06g33390
OsAffx.27913.1.S1_at--852--9591Chr06:19445218..19445242 (25 bp)
TCATCATCACAAGGCGGTTGTTGCG
LOC_Os06g33390
OsAffx.27913.1.S1_at--877--8251Chr06:19445139..19445163 (25 bp)
GGCAGCGCGCTCTACGACTCGTACG
LOC_Os06g33390
OsAffx.27913.1.S1_at--753--4691Chr06:19445066..19445090 (25 bp)
GCGGCAGGTCGCTGTCCATGCCGCA
LOC_Os06g33390
OsAffx.27913.1.S1_at--55--911Chr06:19444953..19444977 (25 bp)
AGGCTGTTCGGGAAGGTGCTGCTCC
LOC_Os06g33390
OsAffx.27913.1.S1_at--340--9271Chr06:19444931..19444955 (25 bp)
TCCGGCTGAGGTTCCCCGTGGCGTC
LOC_Os06g33390
OsAffx.27913.1.S1_at--717--4151Chr06:19444834..19444858 (25 bp)
CGCGCTGACGTCGATCCCGGAGGAG
LOC_Os06g33390
OsAffx.27913.1.S1_at--491--9291Chr06:19444745..19444769 (25 bp)
TCCGCAAGGCGCAGTCGGAGCGCTT
LOC_Os06g33390
OsAffx.27913.1.S1_at--728--4911Chr06:19444724..19444748 (25 bp)
GCTTCGTCGGCAGCAAGACGGCATC
LOC_Os06g33390
Target Sequence
GCAGCGGATGGTCGTCATCATCACAAGGCGGTTGTTGCGGCGGACGGCGGCGGCGGCGGCGGCGCGGGGACGGCGGCGCT
GGTGTGGGACTGCGGCAGCGCGCTCTACGACTCGTACGAGCTCACCTCCTTCCGCCGCCAGCTCGACGCCGCCGTGCTCT
CCTGCGGCGGCAGGTCGCTGTCCATGCCGCACCTGCTGTCGTCGTCGTCGACGCAGCAGCAGCAGATGCCGGCGGGGCGG
AGGAGGAGGAGGAGGCGGCGGCTGCCGGCGATGCTCCGGAGGCTGTTCGGGAAGGTGCTGCTCCGGCTGAGGTTCCCCGT
GGCGTCTAGGGCGGCGAGGGGTGGCTGGTACGACTACGGCGCCCACGGCGACGGCCGCCCGGGGTCGCCGTGGTCCGGCG
CGCTGACGTCGATCCCGGAGGAGAGCGCCAGCCCGGAGAACGGGCCGTCGTCGTCCCCGCTGGTCGACGACGACGGGCCG
AGCGCGCTCCGCAAGGCGCAGTCGGAGCGCTTCGTCGGCAGCAAGACGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis