Browse Element(s) Details


OsAffx.2792.1.S1_s_at

Description tigr:9630.m02799
TID=OsAffx.2792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2932011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29270NANA2+17384524..17385650hypothetical protein
LOC_Os02g29280Os.54691.1.S1_x_at3/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29280OsAffx.10222.1.S1_at1/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29280OsAffx.10222.1.S1_x_at1/112+17387559..17392310retrotransposon protein, putative, unclassified
LOC_Os02g29290NANA2+17397604..17398845hypothetical protein
LOC_Os02g29300Os.27557.1.S1_at10/112+17400342..17405250expressed protein
LOC_Os02g29310OsAffx.2791.1.S1_at11/112+17409434..17409856hypothetical protein
LOC_Os02g29320OsAffx.2792.1.S1_s_at11/112+17410542..17413326expressed protein
LOC_Os02g29330OsAffx.22940.2.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.1.S1_s_at11/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_x_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.5.S1_at10/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.3.S1_x_at9/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.22940.2.S1_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.3.S1_x_at8/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330Os.35344.18.S1_x_at6/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29330OsAffx.31552.2.S1_at1/112+17414731..17419698transposon protein, putative, Mutator sub-class
LOC_Os02g29340Os.25221.1.S1_at11/112+17422161..17425495HSF-type DNA-binding domain containing protein, expressed
LOC_Os02g29350OsAffx.12270.1.S1_at9/112+17429981..17431271hypothetical protein
LOC_Os02g29360Os.8066.1.S1_at2/112+17433950..17435646expressed protein
LOC_Os02g29370NANA2+17437564..17439723transposon protein, putative, Mariner sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2792.1.S1_s_at--1043--5731Chr02:17412889..17412913 (25 bp)
GACTGGCAGAGTTTCTTGGAGAGCT
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--328--5651Chr02:17412936..17412960 (25 bp)
GACAGATATGTTGCTGCCCTCAAAG
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--581--651Chr02:17412985..17413009 (25 bp)
ATGAACGGATTCAGCCTGTCAACAA
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--166--5291Chr02:17413011..17413035 (25 bp)
GAAGGTACACCGGAGAGTCCGCCTG
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--113--1151Chr02:17413026..17413050 (25 bp)
AGTCCGCCTGTCAAGGAGCAAGCTA
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--506--5951Chr02:17413041..17413065 (25 bp)
GAGCAAGCTACAACGGAGAGTGTCA
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--470--6571Chr02:17413075..17413099 (25 bp)
GATTCATGGTTATTGCTCCGAGAAA
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--1086--331Chr02:17413126..17413150 (25 bp)
ATAAATGTGCTGTACCTTTGGAAGG
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--521--4971Chr02:17413170..17413194 (25 bp)
GCATCATTATGCATCTAGTTTTTGT
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--238--3231Chr02:17413202..17413226 (25 bp)
CAAGATGGGTTCACAGTACACTGAT
LOC_Os02g29320
OsAffx.2792.1.S1_s_at--566--6271Chr02:17413242..17413266 (25 bp)
GATGTCCTGTAAATTTTGGTCTGTG
LOC_Os02g29320
Target Sequence 
GACTGGCAGAGTTTCTTGGAGAGCTGCAAAGGAAAGAGGACACAAATGACAGATATGTTGCTGCCCTCAAAGGGGAGACA
CTGACGAGGAAGCGGTATGAACGGATTCAGCCTGTCAACAAGGAAGGTACACCGGAGAGTCCGCCTGTCAAGGAGCAAGC
TACAACGGAGAGTGTCAAGGCTAAATGATTCATGGTTATTGCTCCGAGAAAGATATTATCCACTCAAAACACTGAACATA
AATGTGCTGTACCTTTGGAAGGTTGAATTCAAAGTTCGTAAGCATCATTATGCATCTAGTTTTTGTTTAACTACAAGATG
GGTTCACAGTACACTGATATTTTAGTTGCAGTTGATGTCCTGTAAATTTTGGTCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2792.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis