Browse Element(s) Details

OsAffx.27929.1.S1_at

Description

tigr:9634.m03242
TID=OsAffx.27929.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=CAF1 family ribonuclease
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g34520	11/11	CAF1 family ribonuclease containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g34470	OsAffx.27933.1.S1_at	11/11	6	+	20063669..20064172	Zinc finger, C3HC4 type family protein
LOC_Os06g34480	NA	NA	6	+	20068816..20072120	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34490	NA	NA	6	+	20074934..20075926	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34500	NA	NA	6	+	20076971..20079548	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34510	NA	NA	6	+	20080452..20083772	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34520	OsAffx.27929.1.S1_at	11/11	6	+	20084774..20085595	CAF1 family ribonuclease containing protein
LOC_Os06g34530	NA	NA	6	+	20087573..20088145	Zinc finger, C3HC4 type family protein
LOC_Os06g34540	NA	NA	6	+	20092407..20093057	hypothetical protein
LOC_Os06g34550	OsAffx.27931.2.S1_at	11/11	6	+	20093445..20093960	hypothetical protein
LOC_Os06g34550	OsAffx.27931.2.S1_x_at	11/11	6	+	20093445..20093960	hypothetical protein
LOC_Os06g34560	OsAffx.27942.1.S1_at	10/11	6	+	20097737..20099499	Zinc finger, C3HC4 type family protein
LOC_Os06g34564	OsAffx.20927.1.S1_x_at	9/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.20927.1.S1_at	8/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.17778.2.S1_at	2/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.29316.1.S1_x_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.14776.1.S1_x_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.6537.1.S1_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34570	OsAffx.27937.1.S1_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.27937.2.S1_s_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.17323.1.S1_at	1/11	6	+	20105011..20111110	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009451	biological_process	RNA modification
GO:0004540	molecular_function	ribonuclease activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27929.1.S1_at--449--1065	1	Chr06:20085038..20085062 (25 bp)	TTCGCCTGGGAGTTCAACCTGAACG	LOC_Os06g34520
OsAffx.27929.1.S1_at--276--675	1	Chr06:20085049..20085073 (25 bp)	GTTCAACCTGAACGAGTTCGACCTC	LOC_Os06g34520
OsAffx.27929.1.S1_at--432--989	1	Chr06:20085257..20085281 (25 bp)	TACTTCGCCAGGATCTTGATGCTCG	LOC_Os06g34520
OsAffx.27929.1.S1_at--1003--441	1	Chr06:20085263..20085287 (25 bp)	GCCAGGATCTTGATGCTCGCCGTCG	LOC_Os06g34520
OsAffx.27929.1.S1_at--125--939	1	Chr06:20085348..20085372 (25 bp)	TCGAGGAGATGGTCCGCTCGCTGCT	LOC_Os06g34520
OsAffx.27929.1.S1_at--835--759	1	Chr06:20085374..20085398 (25 bp)	GGGCATCACGTGTACGACGTCAGGT	LOC_Os06g34520
OsAffx.27929.1.S1_at--107--333	1	Chr06:20085380..20085404 (25 bp)	CACGTGTACGACGTCAGGTTGCTGG	LOC_Os06g34520
OsAffx.27929.1.S1_at--1052--479	1	Chr06:20085424..20085448 (25 bp)	GCTCGCCGACGTTGCGAGGCAGCTC	LOC_Os06g34520
OsAffx.27929.1.S1_at--795--963	1	Chr06:20085504..20085528 (25 bp)	TCATGGCGCTGCAGGCTTTCGAAGC	LOC_Os06g34520
OsAffx.27929.1.S1_at--985--487	1	Chr06:20085518..20085542 (25 bp)	GCTTTCGAAGCCCTGAGGGAGCAAT	LOC_Os06g34520
OsAffx.27929.1.S1_at--38--303	1	Chr06:20085540..20085564 (25 bp)	AATGCCGCGGCGTGATGCCTCATCG	LOC_Os06g34520

Target Sequence

TTCGCCTGGGAGTTCAACCTGAACGAGTTCGACCTCGCCGCCGACGGCGACATGTGCGAGCCGGGCTCCGTCGACTACCT
CCGCCACCGCGGCATGGACTTCAACGCCCTCCCATGGTCGGGCGTCGGCGCCGCCAGCCTCGGCCGCCTGCTCTGGAGCT
CCGGCCTCCTCGCCGCGCGGCCGTCGTGGGCCACCTTCGCCGGGGCCTACCACGTCGCCTACTTCGCCAGGATCTTGATG
CTCGCCGTCGCCGTCGCCGGCACCGGCGGCGGCGGGGCGGCGAGGCGGCTCCCCGCCGACGTCGGGGGATTCGAGGAGAT
GGTCCGCTCGCTGCTGGGGCATCACGTGTACGACGTCAGGTTGCTGGCCGGGGAGCTCAGGGGCCCGCTCGCCGACGTTG
CGAGGCAGCTCGGCGCCGCTGTCCCAGCCGACGCGGCCGCCGCGGGGCTCGCCGGCGCCGGCGCCCTCATGGCGCTGCAG
GCTTTCGAAGCCCTGAGGGAGCAATGCCGCGGCGTGATGCCTCATCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis