Browse Element(s) Details


OsAffx.27954.1.S1_at

Description tigr:9634.m03384
TID=OsAffx.27954.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3575011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35710OsAffx.22947.1.S1_x_at11/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.2.S1_x_at4/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.3.S1_x_at3/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710OsAffx.22947.5.S1_x_at3/116+20837753..20844117retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35720NANA6+20846326..20848652retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35730Os.38797.1.S1_at3/116+20850303..2085449360S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730OsAffx.25258.2.S1_x_at2/116+20850303..2085449360S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730OsAffx.25258.2.S1_at1/116+20850303..2085449360S ribosomal protein L11-1, putative, expressed
LOC_Os06g35740OsAffx.5022.1.S1_at11/116+20858957..20859831hypothetical protein
LOC_Os06g35750OsAffx.27954.1.S1_at11/116+20860227..20861352hypothetical protein
LOC_Os06g35760OsAffx.15759.1.S1_at10/116+20863870..20864853hypothetical protein
LOC_Os06g35770NANA6+20867429..20868548expressed protein
LOC_Os06g35780Os.46785.2.S1_x_at2/116+20878191..20883205retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35790NANA6+20884780..20885037hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27954.1.S1_at--586--8291Chr06:20861246..20861270 (25 bp)
GGCTTGGCCATGACCGAGCGACCAA
LOC_Os06g35750
OsAffx.27954.1.S1_at--670--3493Chr12:5727669..5727693 (25 bp)
CATGGTCATGGTGAGCTTTGCCGAC
NONE
OsAffx.27954.1.S1_at--999--8893Chr12:5727680..5727704 (25 bp)
TGAGCTTTGCCGACGTCAGGAAGGA
NONE
OsAffx.27954.1.S1_at--221--7791Chr06:20860452..20860476 (25 bp)
GGTGCCACGAGCCATGAGGCCCATC
LOC_Os06g35750
OsAffx.27954.1.S1_at--647--4111Chr06:20860414..20860438 (25 bp)
CGAAGACGACTGTCACTGTGGGCGT
LOC_Os06g35750
OsAffx.27954.1.S1_at--108--5051Chr06:20860371..20860395 (25 bp)
GCAGAGGCCGCCGATAGCACAAGTG
LOC_Os06g35750
OsAffx.27954.1.S1_at--18--2231Chr06:20860353..20860377 (25 bp)
ACAAGTGCGGTCGTTGTGTAGCTGC
LOC_Os06g35750
OsAffx.27954.1.S1_at--347--10831Chr06:20860340..20860364 (25 bp)
TTGTGTAGCTGCATAGTCCACGCCG
LOC_Os06g35750
OsAffx.27954.1.S1_at--969--4491Chr06:20860316..20860340 (25 bp)
GCCGTCACCGCAGAACTATTGCGAG
LOC_Os06g35750
OsAffx.27954.1.S1_at--954--51Chr06:20860299..20860323 (25 bp)
ATTGCGAGACAGTGTCGAAGTGCTC
LOC_Os06g35750
OsAffx.27954.1.S1_at--305--10031Chr06:20860264..20860288 (25 bp)
TAGATGGGTGCCATATCGTCCTTGG
LOC_Os06g35750
Target Sequence 
GGCTTGGCCATGACCGAGCGACCAAGCTCATGGTCATGGTGAGCTTTGCCGACGTCAGGAAGGAGGATGGTCGTCGTCGT
TCAGGGTGGGCATCGCGCTCGCTGGTGCCACGAGCCATGAGGCCCATCTGCCTGGAGATGGCGAAGACGACTGTCACTGT
GGGCGTCGGCATGGCAAGAGATAGGCAGAGGCCGCCGATAGCACAAGTGCGGTCGTTGTGTAGCTGCATAGTCCACGCCG
CCGTCACCGCAGAACTATTGCGAGACAGTGTCGAAGTGCTCGAGGAGGTGATAGATGGGTGCCATATCGTCCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27954.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis