Browse Element(s) Details


OsAffx.27964.1.S1_at

Description tigr:9634.m03464
TID=OsAffx.27964.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g364609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36400OsAffx.15777.1.S1_at1/116+21372861..21376315HAD superfamily phosphatase containing protein, expressed
LOC_Os06g36410OsAffx.15778.1.S1_at10/116+21377262..21378337hypothetical protein
LOC_Os06g36420OsAffx.25936.1.S1_s_at8/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.7.S1_s_at7/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.2.S1_x_at4/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36420OsAffx.25936.5.S1_x_at2/116+21384989..21388027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36430NANA6+21390529..21391513hypothetical protein
LOC_Os06g36440NANA6+21391678..21393665transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g36450Os.5052.1.S1_at11/116+21396009..21398399Ferroportin1 family protein, expressed
LOC_Os06g36460OsAffx.27964.1.S1_at9/116+21399839..21400751hypothetical protein
LOC_Os06g36470Os.35344.18.S1_x_at11/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470Os.35344.3.S1_x_at9/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36470OsAffx.22940.5.S1_x_at3/116+21403279..21409326transposon protein, putative, Mutator sub-class
LOC_Os06g36480OsAffx.15779.1.S1_at11/116+21413177..21420657No apical meristem protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27964.1.S1_at--189--2612Chr06:21399874..21399898 (25 bp)
AACCCGTTTGGATTTATATGACACA
LOC_Os06g36460
OsAffx.27964.1.S1_at--829--10171NONE
TATATGACACACTTGGGCCACGGAT
NONE
OsAffx.27964.1.S1_at--935--3291NONE
CACACTTGGGCCACGGATGAAGGGA
NONE
OsAffx.27964.1.S1_at--1118--2871Chr06:21400606..21400630 (25 bp)
AAGGGCAGCACGTGGCCACTGGACA
LOC_Os06g36460
OsAffx.27964.1.S1_at--341--3411Chr06:21400611..21400635 (25 bp)
CAGCACGTGGCCACTGGACAGGAGC
LOC_Os06g36460
OsAffx.27964.1.S1_at--220--8151Chr06:21400637..21400661 (25 bp)
GGACACTGCGGCTGCGGAAGATTTC
LOC_Os06g36460
OsAffx.27964.1.S1_at--21--4691Chr06:21400650..21400674 (25 bp)
GCGGAAGATTTCCTTGTCCTTGTCA
LOC_Os06g36460
OsAffx.27964.1.S1_at--12--1271Chr06:21400655..21400679 (25 bp)
AGATTTCCTTGTCCTTGTCAGTGGC
LOC_Os06g36460
OsAffx.27964.1.S1_at--150--8711Chr06:21400664..21400688 (25 bp)
TGTCCTTGTCAGTGGCCTTCCAGTA
LOC_Os06g36460
OsAffx.27964.1.S1_at--369--8732Chr06:21400670..21400694 (25 bp)
TGTCAGTGGCCTTCCAGTAGCCGCT
LOC_Os06g36460
OsAffx.27964.1.S1_at--675--4491Chr06:21400696..21400720 (25 bp)
GCCGTGGCACGGTTGGTCCTCATGT
LOC_Os06g36460
Target Sequence 
AACCCGTTTGGATTTATATGACACACTTGGGCCACGGATGAAGGGAGAAGGGCAGCACGTGGCCACTGGACAGGAGCTGG
ACACTGCGGCTGCGGAAGATTTCCTTGTCCTTGTCAGTGGCCTTCCAGTAGCCGCTCGCCGTGGCACGGTTGGTCCTCAT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis