Browse Element(s) Details


OsAffx.27985.1.S1_at

Description tigr:9634.m03641
TID=OsAffx.27985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3823011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38160OsAffx.15815.1.S1_at11/116+22597674..22600260Legume lectins beta domain containing protein
LOC_Os06g38170Os.7582.1.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38170Os.31929.5.S1_at1/116+22600739..22602679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38180NANA6+22604602..22605860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38190OsAffx.15816.1.S1_at10/116+22610892..22612283hypothetical protein
LOC_Os06g38200Os.52817.1.S1_at11/116+22613002..22615284expressed protein
LOC_Os06g38210Os.12027.1.S1_a_at6/116+22615947..22616270expressed protein
LOC_Os06g38220Os.43124.1.S1_at1/116+22618319..22620632retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38230OsAffx.27985.1.S1_at11/116+22622060..22624605hypothetical protein
LOC_Os06g38240NANA6+22626393..22629965retrotransposon protein, putative, unclassified
LOC_Os06g38250NANA6+22631137..22631904retrotransposon protein, putative, unclassified
LOC_Os06g38260NANA6+22635631..22637917retrotransposon protein, putative, unclassified
LOC_Os06g38270NANA6+22638451..22641111hypothetical protein
LOC_Os06g38280OsAffx.27986.1.S1_at11/116+22643581..22643962hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27985.1.S1_at--749--8291Chr06:22622615..22622639 (25 bp)
GGCTTCGACCGCTGAAAATCGAGGA
LOC_Os06g38230
OsAffx.27985.1.S1_at--831--2751Chr06:22622566..22622590 (25 bp)
AAGACACGTCGTGCGGACAACTTAA
LOC_Os06g38230
OsAffx.27985.1.S1_at--557--5191Chr06:22622525..22622549 (25 bp)
GAATAAGTCTCTCACGGGCGAAAAC
LOC_Os06g38230
OsAffx.27985.1.S1_at--1049--6031Chr06:22622451..22622475 (25 bp)
GAGATCGTCAACTTGCTATGGCCGA
LOC_Os06g38230
OsAffx.27985.1.S1_at--220--371Chr06:22622419..22622443 (25 bp)
ATCAAGTCCCTTGAGGCTCGTCTTG
LOC_Os06g38230
OsAffx.27985.1.S1_at--367--5411Chr06:22622386..22622410 (25 bp)
GAAGCTGCTACTGCAACTCAGGCGC
LOC_Os06g38230
OsAffx.27985.1.S1_at--154--3811Chr06:22622283..22622307 (25 bp)
CTCCGAGTGACGACGGGACGGCATT
LOC_Os06g38230
OsAffx.27985.1.S1_at--24--5331Chr06:22622215..22622239 (25 bp)
GAAGTGGCCAGTGCCTACGGAGACT
LOC_Os06g38230
OsAffx.27985.1.S1_at--1117--5971Chr06:22622196..22622220 (25 bp)
GAGACTGCTGTGCACATGTTTCGGC
LOC_Os06g38230
OsAffx.27985.1.S1_at--956--7931Chr06:22622123..22622147 (25 bp)
GGATTTCCCTGACCTCGTGAAAGAG
LOC_Os06g38230
OsAffx.27985.1.S1_at--136--1011Chr06:22622100..22622124 (25 bp)
AGGATTGGCCCGACAACTCGCAGTG
LOC_Os06g38230
Target Sequence 
GGCTTCGACCGCTGAAAATCGAGGAGGATCTTCGCCACAAGGAGGACGAAAGACACGTCGTGCGGACAACTTAAAAAAGT
CGAATGCAGAGAATAAGTCTCTCACGGGCGAAAACAAGTCTCTCCATGCCGACCTGGAGGCGGCGAACAAGCGGGACGCT
GAACGAGATCGTCAACTTGCTATGGCCGAAGAGAAGATCAAGTCCCTTGAGGCTCGTCTTGTCTCGGCCGAAGCTGCTAC
TGCAACTCAGGCGCCGGTGACGGAGTCCGCCAAACAAGCCGGCTACACCCTCAGGCTAGCTCTCAACAACCTCGGCGCGC
ACGGGGAAGGCGCTCCGAGTGACGACGGGACGGCATTCGACTTCTCCGAGTTGACGCAGGAAGCGGCCGGCTTGGTCGTC
GAAGTGGCCAGTGCCTACGGAGACTGCTGTGCACATGTTTCGGCGGGCTTCGTTCTTAGCCTCCTGCACGCGCACGGCTG
TGACCATATCGGGGATTTCCCTGACCTCGTGAAAGAGGATTGGCCCGACAACTCGCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis