Browse Element(s) Details


OsAffx.27987.1.S1_at

Description tigr:9634.m03653
TID=OsAffx.27987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3833011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38320Os.19296.2.S1_at11/116+22698046..22704079expressed protein
LOC_Os06g38320Os.19296.1.S1_at10/116+22698046..22704079expressed protein
LOC_Os06g38330OsAffx.27987.1.S1_at11/116+22708740..22709114hypothetical protein
LOC_Os06g38340Os.53763.1.A1_at11/116+22709848..22713669Leucine Rich Repeat family protein, expressed
LOC_Os06g38350OsAffx.15818.1.S1_at11/116+22726469..22726801hypothetical protein
LOC_Os06g38360Os.35344.18.S1_x_at7/116+22730001..22732970hypothetical protein
LOC_Os06g38360Os.35344.3.S1_x_at7/116+22730001..22732970hypothetical protein
LOC_Os06g38360OsAffx.22940.5.S1_x_at2/116+22730001..22732970hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27987.1.S1_at--334--10491Chr06:22708795..22708819 (25 bp)
TTCAGCAACCGGCTCTAGTAGTCGT
LOC_Os06g38330
OsAffx.27987.1.S1_at--283--1451Chr06:22708798..22708822 (25 bp)
AGCAACCGGCTCTAGTAGTCGTCCG
LOC_Os06g38330
OsAffx.27987.1.S1_at--1078--8291Chr06:22708805..22708829 (25 bp)
GGCTCTAGTAGTCGTCCGGCCCCAA
LOC_Os06g38330
OsAffx.27987.1.S1_at--317--971Chr06:22708838..22708862 (25 bp)
AGGACCCCAGCTACGTGGCAGCGCT
LOC_Os06g38330
OsAffx.27987.1.S1_at--668--9931Chr06:22708849..22708873 (25 bp)
TACGTGGCAGCGCTGGCGACGCAGT
LOC_Os06g38330
OsAffx.27987.1.S1_at--219--6171Chr06:22708893..22708917 (25 bp)
GAGGAGGCCGGGAGCTGGTGCCCAT
LOC_Os06g38330
OsAffx.27987.1.S1_at--1155--491Chr06:22708969..22708993 (25 bp)
ATCGTCGCCAACTGGGGATTGCCAA
LOC_Os06g38330
OsAffx.27987.1.S1_at--727--7671Chr06:22708983..22709007 (25 bp)
GGGATTGCCAATAGTCCCGACTCGT
LOC_Os06g38330
OsAffx.27987.1.S1_at--96--71Chr06:22708986..22709010 (25 bp)
ATTGCCAATAGTCCCGACTCGTTCC
LOC_Os06g38330
OsAffx.27987.1.S1_at--412--4711Chr06:22709022..22709046 (25 bp)
GCGGCCGACAACGTCAAGATGGGCT
LOC_Os06g38330
OsAffx.27987.1.S1_at--914--8391Chr06:22709024..22709048 (25 bp)
GGCCGACAACGTCAAGATGGGCTCC
LOC_Os06g38330
Target Sequence 
TTCAGCAACCGGCTCTAGTAGTCGTCCGGCCCCAACGCCGGGCAGGACCCCAGCTACGTGGCAGCGCTGGCGACGCAGTG
GCGCAGTGCCCGCAGCAGGAGGAGGCCGGGAGCTGGTGCCCATGGACTGGACGCCGTCACGCCCAATACCTTCGACACCA
ACTACCATGCCGCCATCGTCGCCAACTGGGGATTGCCAATAGTCCCGACTCGTTCCAGACCGACTTCGCGGCCGACAACG
TCAAGATGGGCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis