Browse Element(s) Details


OsAffx.27993.1.S1_at

Description tigr:9634.m03692
TID=OsAffx.27993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3871011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38670OsAffx.15823.1.S1_at10/116+22957564..22965353Leucine Rich Repeat family protein, expressed
LOC_Os06g38680Os.49927.1.S1_at11/116+22966819..22970854expressed protein
LOC_Os06g38700NANA6+22978951..22981668transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38710OsAffx.27993.1.S1_at11/116+22982848..22983680hypothetical protein
LOC_Os06g38720OsAffx.15824.1.S1_at11/116+22987756..22988115hypothetical protein
LOC_Os06g38730OsAffx.27995.1.S1_at1/116+22991414..22994906Leucine Rich Repeat family protein, expressed
LOC_Os06g38740OsAffx.27994.1.S1_at11/116+22997559..22998335hypothetical protein
LOC_Os06g38750OsAffx.5050.1.S1_at11/116+22998850..23000440expressed protein
LOC_Os06g38760OsAffx.27995.1.S1_at11/116+23004344..23010474Leucine Rich Repeat family protein
LOC_Os06g38760Os.27322.1.S1_x_at1/116+23004344..23010474Leucine Rich Repeat family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27993.1.S1_at--160--3931Chr06:22983454..22983586 (25 bp)
CGGCCGCTCCAGCTTGTCAACTGAA
LOC_Os06g38710
OsAffx.27993.1.S1_at--179--7091Chr06:22983439..22983463 (25 bp)
GTCAACTGAAACTAACACCCGTTCT
LOC_Os06g38710
OsAffx.27993.1.S1_at--391--10551Chr06:22983418..22983442 (25 bp)
TTCTAGTAGAACATCCCGGGTTAAG
LOC_Os06g38710
OsAffx.27993.1.S1_at--569--2091Chr06:22983408..22983432 (25 bp)
ACATCCCGGGTTAAGCATAGAGCTG
LOC_Os06g38710
OsAffx.27993.1.S1_at--1062--231Chr06:22983359..22983383 (25 bp)
ATATCACCCAACTGCGAGTCCAAGC
LOC_Os06g38710
OsAffx.27993.1.S1_at--148--6111Chr06:22982964..22983368 (25 bp)
GAGTCCAAGCCTCCTCCAGTTGGTC
LOC_Os06g38710
OsAffx.27993.1.S1_at--1028--5431Chr06:22982934..22982958 (25 bp)
GAACCTGAGTCTGATCCTCATGACA
LOC_Os06g38710
OsAffx.27993.1.S1_at--1122--7171Chr06:22982926..22982950 (25 bp)
GTCTGATCCTCATGACACATTTCAA
LOC_Os06g38710
OsAffx.27993.1.S1_at--384--3231Chr06:22982904..22982928 (25 bp)
CAAGATCCTAAAAACGACCCTCGAG
LOC_Os06g38710
OsAffx.27993.1.S1_at--446--4191Chr06:22982887..22982911 (25 bp)
CCCTCGAGGAGGTAACAAACGCTTG
LOC_Os06g38710
OsAffx.27993.1.S1_at--446--1011Chr06:22982878..22982902 (25 bp)
AGGTAACAAACGCTTGCCTGTACGC
LOC_Os06g38710
Target Sequence 
CGGCCGCTCCAGCTTGTCAACTGAAACTAACACCCGTTCTAGTAGAACATCCCGGGTTAAGCATAGAGCTGACGATCCGC
GCCGTGGTCCGTCCCATATCACCCAACTGCGAGTCCAAGCCTCCTCCAGTTGGTCCGCTCGAACCTGAGTCTGATCCTCA
TGACACATTTCAAGATCCTAAAAACGACCCTCGAGGAGGTAACAAACGCTTGCCTGTACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis