Browse Element(s) Details


OsAffx.28000.1.A1_at

Description tigr:9637.m02663
TID=OsAffx.28000.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3903011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38990Os.51310.1.S1_at11/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990Os.55583.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g38990OsAffx.4190.1.S1_x_at1/116+23143732..23147848leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os06g39000OsAffx.15829.1.S1_at11/116+23155212..23155634hypothetical protein
LOC_Os06g39010OsAffx.15830.1.S1_at11/116+23156564..23157463hypothetical protein
LOC_Os06g39020NANA6+23164710..23169275retrotransposon protein, putative, unclassified
LOC_Os06g39030OsAffx.28000.1.A1_at11/116+23171472..23172146hypothetical protein
LOC_Os06g39040OsAffx.28001.1.S1_s_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39040OsAffx.28001.1.S1_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39050Os.54909.1.S1_at11/116+23184075..23185284Syntaxin 125, putative, expressed
LOC_Os06g39060Os.4941.1.S1_at10/116+23186197..23187970Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os06g39070NANA6+23195393..23196850UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28000.1.A1_at--929--9312Chr09:18179528..18179552 (25 bp)
TCCCATCGATCGGAGGTTGCGGTTC
NONE
OsAffx.28000.1.A1_at--189--3552Chr09:18179525..18179549 (25 bp)
CATCGATCGGAGGTTGCGGTTCTTC
NONE
OsAffx.28000.1.A1_at--503--9393Chr09:18179523..18179547 (25 bp)
TCGATCGGAGGTTGCGGTTCTTCCA
NONE
OsAffx.28000.1.A1_at--545--4032Chr09:18179522..18179546 (25 bp)
CGATCGGAGGTTGCGGTTCTTCCAC
NONE
OsAffx.28000.1.A1_at--1155--9432Chr09:18179519..18179543 (25 bp)
TCGGAGGTTGCGGTTCTTCCACCCT
NONE
OsAffx.28000.1.A1_at--49--7992Chr09:18179517..18179541 (25 bp)
GGAGGTTGCGGTTCTTCCACCCTGG
NONE
OsAffx.28000.1.A1_at--347--6672Chr09:18179513..18179537 (25 bp)
GTTGCGGTTCTTCCACCCTGGGTCG
NONE
OsAffx.28000.1.A1_at--237--10692Chr09:18179503..18179527 (25 bp)
TTCCACCCTGGGTCGCTCCTTGGTG
NONE
OsAffx.28000.1.A1_at--512--6592Chr09:18179406..18179430 (25 bp)
GTTGGTAGGGAGTGGTCTCCTTGGA
NONE
OsAffx.28000.1.A1_at--235--1931Chr06:23171507..23171531 (25 bp)
ACGGCGGCGGTATACGCGAGTGGAT
LOC_Os06g39030
OsAffx.28000.1.A1_at--920--8351Chr06:23171502..23171526 (25 bp)
GGCGGTATACGCGAGTGGATATGAG
LOC_Os06g39030
Target Sequence 
TCCCATCGATCGGAGGTTGCGGTTCTTCCACCCTGGGTCGCTCCTTGGTGGCCTGACCTNGAGACGGNGGCNAGATNGGG
GTGGCGTGGTGGGGCTGCGGGGATGGCTCNGGTGGAGCGNCGGTTGGTAGGGAGTGGTCTCCTTGGAGAGGAGGAGGAGG
AGAAGGGGAATGGGATGGCGGAGGTGAACCCATGTGTGTGCTNTCCGGTGGTACGGTTGTCTCNNGCGAGCTCGCCATGG
GTGAGGGGGTGGCGCCGCGCGACGGCGGCGGTATACGCGAGTGGATATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28000.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis