Browse Element(s) Details

OsAffx.28007.1.S1_at

Description

tigr:9634.m03772
TID=OsAffx.28007.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g39440	11/11	Amidophosphoribosyltransferase, chloroplast precursor, putative

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g39410	Os.46578.1.S1_at	3/11	6	+	23400153..23400370	hypothetical protein
LOC_Os06g39410	Os.46578.1.S1_x_at	2/11	6	+	23400153..23400370	hypothetical protein
LOC_Os06g39420	OsAffx.10967.5.S1_x_at	10/11	6	+	23404705..23406362	hypothetical protein
LOC_Os06g39420	OsAffx.10967.5.S1_at	10/11	6	+	23404705..23406362	hypothetical protein
LOC_Os06g39430	OsAffx.5062.1.S1_at	11/11	6	+	23408358..23409028	hypothetical protein
LOC_Os06g39440	OsAffx.28007.1.S1_at	11/11	6	+	23413389..23414493	Amidophosphoribosyltransferase, chloroplast precursor, putative
LOC_Os06g39450	Os.2987.3.S1_x_at	1/11	6	+	23424305..23428378	transposon protein, putative, unclassified
LOC_Os06g39460	Os.56073.1.S1_at	9/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_x_at	8/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.2.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_x_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.46557.1.S1_at	6/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	Os.8753.4.S1_at	2/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_x_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39460	OsAffx.5618.1.S1_at	1/11	6	+	23429642..23434093	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g39470	Os.49692.1.S1_at	3/11	6	+	23437878..23439327	Transferase family protein, expressed
LOC_Os06g39470	OsAffx.9719.1.S1_x_at	1/11	6	+	23437878..23439327	Transferase family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0009113	biological_process	purine base biosynthesis
GO:0004044	molecular_function	amidophosphoribosyltransferase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28007.1.S1_at--250--601	1	Chr06:23414203..23414224 (22 bp)	GAGAGCGGCTCTAGTGGTTCTCGCC	LOC_Os06g39440
OsAffx.28007.1.S1_at--1124--109	1	Chr06:23414212..23414236 (25 bp)	AGTGGTTCTCGCCTTTTGTTGTTGG	LOC_Os06g39440
OsAffx.28007.1.S1_at--936--927	1	Chr06:23414220..23414244 (25 bp)	TCGCCTTTTGTTGTTGGTCGGGCCA	LOC_Os06g39440
OsAffx.28007.1.S1_at--197--881	1	Chr06:23414231..23414255 (25 bp)	TGTTGGTCGGGCCACTGTTGCCCAA	LOC_Os06g39440
OsAffx.28007.1.S1_at--1158--261	1	Chr06:23414254..23414278 (25 bp)	AACCGGGTCACTCCATTCTATGGGA	LOC_Os06g39440
OsAffx.28007.1.S1_at--631--199	1	Chr06:23414263..23414287 (25 bp)	ACTCCATTCTATGGGAGAGGCAATG	LOC_Os06g39440
OsAffx.28007.1.S1_at--254--491	1	Chr06:23414300..23414324 (25 bp)	GCTTCGACGACCACCCGTGCGAGGA	LOC_Os06g39440
OsAffx.28007.1.S1_at--518--97	1	Chr06:23414321..23414345 (25 bp)	AGGAGTGTGGGCTGGTCGAGGTCAT	LOC_Os06g39440
OsAffx.28007.1.S1_at--296--811	1	Chr06:23414349..23414373 (25 bp)	GGACCCCGACGCAATGTCGCTGTGC	LOC_Os06g39440
OsAffx.28007.1.S1_at--377--297	1	Chr06:23414361..23414385 (25 bp)	AATGTCGCTGTGCAACCTCGGGCTG	LOC_Os06g39440
OsAffx.28007.1.S1_at--790--613	1	Chr06:23414410..23414434 (25 bp)	GAGGGTGTCGGGATTGTCGCCATTT	LOC_Os06g39440

Target Sequence

GAGAGCGGCTCTAGTGGTTCTCGCCTTTTGTTGTTGGTCGGGCCACTGTTGCCCAACCGGGTCACTCCATTCTATGGGAG
AGGCAATGAGGAGGATGACGGCTTCGACGACCACCCGTGCGAGGAGTGTGGGCTGGTCGAGGTCATGGGGGACCCCGACG
CAATGTCGCTGTGCAACCTCGGGCTGCAGAAGCTACAGCACCGTGGGAAGGAGGGTGTCGGGATTGTCGCCATTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis