Browse Element(s) Details


OsAffx.2802.1.S1_at

Description tigr:9630.m02885
TID=OsAffx.2802.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3017010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30130NANA2+17891166..17897367retrotransposon protein, putative, unclassified
LOC_Os02g30140Os.16171.1.A1_at11/112+17899269..17903289expressed protein
LOC_Os02g30150OsAffx.2801.1.S1_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30150Os.15982.1.S1_s_at11/112+17904762..17909604NB-ARC domain containing protein, expressed
LOC_Os02g30160OsAffx.25952.1.S1_s_at2/112+17912237..17919538retrotransposon protein, putative, unclassified
LOC_Os02g30170OsAffx.2802.1.S1_at10/112+17922280..17923328hypothetical protein
LOC_Os02g30180Os.7844.1.S1_at11/112+17924881..17930544UBA/TS-N domain containing protein, expressed
LOC_Os02g30190OsAffx.2803.1.S1_at11/112+17942427..17945072hypothetical protein
LOC_Os02g30200Os.52877.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.52877.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.6862.2.A1_at1/112+17946161..17951487expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2802.1.S1_at--576--10451Chr02:17922310..17922334 (25 bp)
TTAGCATCGGTGATGCCTCTTGCCT
LOC_Os02g30170
OsAffx.2802.1.S1_at--565--7191Chr02:17922377..17922401 (25 bp)
GTCGGCAATGGCGTTCTGCAACCAT
LOC_Os02g30170
OsAffx.2802.1.S1_at--111--3211Chr02:17922382..17922406 (25 bp)
CAATGGCGTTCTGCAACCATGCGGG
LOC_Os02g30170
OsAffx.2802.1.S1_at--412--8371Chr02:17922451..17922475 (25 bp)
GGCGCAAGTTCCGAGAGTGGCAGGT
LOC_Os02g30170
OsAffx.2802.1.S1_at--920--4451Chr02:17922563..17922587 (25 bp)
GCCTAGCGATGGTGCCGTCGCTGTT
LOC_Os02g30170
OsAffx.2802.1.S1_at--388--8471Chr02:17922587..17922611 (25 bp)
TGGCGCCCTCAACGGAGTCAGAGAA
LOC_Os02g30170
OsAffx.2802.1.S1_at--1020--2551Chr02:17922597..17922619 (23 bp)
AACGGAGTCAGAGAAGACGACGGCT
LOC_Os02g30170
OsAffx.2802.1.S1_at--988--1371NONE
AGACGACGGCTATGGTACTTTGTTT
NONE
OsAffx.2802.1.S1_at--463--4091Chr02:17923236..17923256 (21 bp)
CGACGGCTATGGTACTTTGTTTGAG
LOC_Os02g30170
OsAffx.2802.1.S1_at--660--8571Chr02:17923241..17923265 (25 bp)
TGGTACTTTGTTTGAGTCTAGCGGG
LOC_Os02g30170
OsAffx.2802.1.S1_at--236--7291Chr02:17923268..17923292 (25 bp)
GTGCCTCGAGCTGCTTAAAAAGAGG
LOC_Os02g30170
Target Sequence 
TTAGCATCGGTGATGCCTCTTGCCTCCGCCACTCACGCATGCGCAGCCCAGCCCACCGTCCGGGGTCGTCGGCAATGGCG
TTCTGCAACCATGCGGGGGTGGCGTGACTCACGGCGAGGCGCTCACGCTTCCTCGAGCGGCGGCGCAAGTTCCGAGAGTG
GCAGGTGGGCGAGCAACCTCGGCCTCGCCGCTGGGCCTAGCGATGGTGCCGTCGCTGTTGGCGCCCTCAACGGAGTCAGA
GAAGACGACGGCTATGGTACTTTGTTTGAGTCTAGCGGGGTGTGCCTCGAGCTGCTTAAAAAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis