Browse Element(s) Details


Os.52877.1.S1_at

Description gb:AK069683.1
DB_XREF= gi:32979707
TID=Os.52877.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030N09, full insert sequence.
FL= gb:AK069683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3020010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30170OsAffx.2802.1.S1_at10/112+17922280..17923328hypothetical protein
LOC_Os02g30180Os.7844.1.S1_at11/112+17924881..17930544UBA/TS-N domain containing protein, expressed
LOC_Os02g30190OsAffx.2803.1.S1_at11/112+17942427..17945072hypothetical protein
LOC_Os02g30200Os.52877.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.52877.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.6862.2.A1_at1/112+17946161..17951487expressed protein
LOC_Os02g30210Os.28039.1.S1_at11/112+17952646..17955834beta scruin, putative, expressed
LOC_Os02g30219NANA2+17968142..17968511NA
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30240Os.53579.1.S1_at11/112+17975638..17976666expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52877.1.S1_at--52--3811NONE
CTCCGGCATGGATCCACGAACGGAG
NONE
Os.52877.1.S1_at--877--1571Chr02:17946343..17946367 (25 bp)
AGCTCTGATTCTGACTGAATCGGTG
LOC_Os02g30200
Os.52877.1.S1_at--585--111Chr02:17946336..17946360 (25 bp)
ATTCTGACTGAATCGGTGGTAATTA
LOC_Os02g30200
Os.52877.1.S1_at--1062--8911Chr02:17946332..17946356 (25 bp)
TGACTGAATCGGTGGTAATTATTAC
LOC_Os02g30200
Os.52877.1.S1_at--1118--1911Chr02:17946309..17946333 (25 bp)
ACAGTAACAAGTTTGTGTTTAGACA
LOC_Os02g30200
Os.52877.1.S1_at--752--5511Chr02:17946280..17946304 (25 bp)
GAAAATCTGACAACACCAGTTGCTG
LOC_Os02g30200
Os.52877.1.S1_at--1049--5651Chr02:17946250..17946274 (25 bp)
GACATAAAATAGCTTTAAGTCTAAT
LOC_Os02g30200
Os.52877.1.S1_at--156--51Chr02:17946224..17946248 (25 bp)
ATTGTTATGTGATCTTGCAAATTAA
LOC_Os02g30200
Os.52877.1.S1_at--966--2291Chr02:17946200..17946224 (25 bp)
AAATGTGTATACTTTGTCCTTTGTT
LOC_Os02g30200
Os.52877.1.S1_at--484--8671Chr02:17946197..17946221 (25 bp)
TGTGTATACTTTGTCCTTTGTTGAT
LOC_Os02g30200
Os.52877.1.S1_at--405--6471Chr02:17946175..17946199 (25 bp)
GATAACTTGATATGGTACATGAAAG
LOC_Os02g30200
Target Sequence 
CTCCGGCATGGATCCACGAACGGAGAACGACCCGTACATGGGGTTCATCTACACGACGTTCCAGGAGCGCGCCACCTCCA
TCTCCCACGGCAACACGGCGCGCCACGCGGGGCGCCACGGCGACGCCGCCCTGGCCCGCGTCTGCGGCACCGTCGCGAGG
TGGGGCGTCCCCGGCCTCGCCGCGGGGCTTTCCGGCGAAGGGCGGCGCGCGCAGGACTTCGTCTGCAGCCTCGGGCCGAG
GTTCAGGAGGATGGAGGAGAGGGCGCAGGAGGCGGCGAAGCGGGCGCCGCCCGCCGCCGCCGCTCCGTTCAGCTGGATCC
ATGGCCGTCAGGTGCAGCTCTGATTCTGACTGAATCGGTGGTAATTATTACAGTAACAAGTTTGTGTTTAGACAGAAAGA
AAATCTGACAACACCAGTTGCTGAGAAAGACATAAAATAGCTTTAAGTCTAATAATTGTTATGTGATCTTGCAAATTAAA
ATGTGTATACTTTGTCCTTTGTTGATAACTTGATATGGTACATGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis