Browse Element(s) Details


Os.28039.1.S1_at

Description gb:AK065386.1
DB_XREF= gi:32975404
TID=Os.28039.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033001H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024N06, full insert sequence.
FL= gb:AK073150.1 gb:AK065386.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3021011/11beta scruin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30180Os.7844.1.S1_at11/112+17924881..17930544UBA/TS-N domain containing protein, expressed
LOC_Os02g30190OsAffx.2803.1.S1_at11/112+17942427..17945072hypothetical protein
LOC_Os02g30200Os.52877.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.52877.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.6862.2.A1_at1/112+17946161..17951487expressed protein
LOC_Os02g30210Os.28039.1.S1_at11/112+17952646..17955834beta scruin, putative, expressed
LOC_Os02g30219NANA2+17968142..17968511NA
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30240Os.53579.1.S1_at11/112+17975638..17976666expressed protein
LOC_Os02g30250OsAffx.24509.1.S1_at10/112+17978830..17980172hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28039.1.S1_at--903--1131Chr02:17953219..17953243 (25 bp)
AGTGCCACTCACAGGTAGTTCTAGT
LOC_Os02g30210
Os.28039.1.S1_at--536--6991Chr02:17953196..17953220 (25 bp)
GTACTCGTTTTTGTTTCGGCATACA
LOC_Os02g30210
Os.28039.1.S1_at--833--2771Chr02:17953139..17953163 (25 bp)
AAGAGCCCTGCTATAAGACACTGAT
LOC_Os02g30210
Os.28039.1.S1_at--724--1411Chr02:17953124..17953148 (25 bp)
AGACACTGATGTATGATCCCGCTGC
LOC_Os02g30210
Os.28039.1.S1_at--877--8911Chr02:17953072..17953096 (25 bp)
TGAGCTCAAGCCACCAGGATTATGT
LOC_Os02g30210
Os.28039.1.S1_at--660--9051Chr02:17953044..17953068 (25 bp)
TGCAGTGTGACCATCAGAGCCTGAT
LOC_Os02g30210
Os.28039.1.S1_at--1034--1371Chr02:17953029..17953053 (25 bp)
AGAGCCTGATGCTTTCTGGCTTGTA
LOC_Os02g30210
Os.28039.1.S1_at--345--4171Chr02:17953003..17953027 (25 bp)
CGCCTTACCATCATCCTTGTAGGAT
LOC_Os02g30210
Os.28039.1.S1_at--26--7991Chr02:17952982..17953006 (25 bp)
GGATGCCATCCGATACCACTATTTA
LOC_Os02g30210
Os.28039.1.S1_at--389--9391Chr02:17952862..17952886 (25 bp)
TCGATTGCAGCGTTGTGCCAGGATG
LOC_Os02g30210
Os.28039.1.S1_at--900--191Chr02:17952648..17952672 (25 bp)
ATTTCTGATGCTCTGTTTTTCCATA
LOC_Os02g30210
Target Sequence 
AGTGCCACTCACAGGTAGTTCTAGTACTCGTTTTTGTTTCGGCATACATGATGGGAAGCTGCTGCTGTTCTCTCTGGATG
AAGAGCCCTGCTATAAGACACTGATGTATGATCCCGCTGCACCAACGGGATCAGAGTGGTNCACATCTGAGCTCAAGCCA
CCAGGATTATGTCTGTGCAGTGTGACCATCAGAGCCTGATGCTTTCTGGCTTGTATCGCCTTACCATCATCCTTGTAGGA
TGCCATCCGATACCACTATTTACTGCTTACAATCAGAGTTGAACTCTCATTTCCAGTGTCGTTTGCTCAGGTATTTTGAT
ATCAAATAATGCTCCAGGGTGCTTATGCTGCATTCATTCGATTGCAGCGTTGTGCCAGGATGCACTTTGTTTCATGTATT
TTACTGCTAGTTGTAGTTCACATGGTTGTTGTCGTTGTACTGGACGATGAATAGCTGATAGGCTGATATGCAACTGTAGT
GTTTGTGGCGGGCAAAGAGGCTAATTGTCAGAAAAGATTTGTCAGCTCTTGCTGTATGTAAACCTTGTTGTCTGAAACAT
TGTCATTCGCTATTTCTGATGCTCTGTTTTTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis