Browse Element(s) Details


OsAffx.2803.1.S1_at

Description tigr:9630.m02887
TID=OsAffx.2803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3019011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30160OsAffx.25952.1.S1_s_at2/112+17912237..17919538retrotransposon protein, putative, unclassified
LOC_Os02g30170OsAffx.2802.1.S1_at10/112+17922280..17923328hypothetical protein
LOC_Os02g30180Os.7844.1.S1_at11/112+17924881..17930544UBA/TS-N domain containing protein, expressed
LOC_Os02g30190OsAffx.2803.1.S1_at11/112+17942427..17945072hypothetical protein
LOC_Os02g30200Os.52877.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.52877.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.6862.2.A1_at1/112+17946161..17951487expressed protein
LOC_Os02g30210Os.28039.1.S1_at11/112+17952646..17955834beta scruin, putative, expressed
LOC_Os02g30219NANA2+17968142..17968511NA
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2803.1.S1_at--127--1531Chr02:17943188..17943212 (25 bp)
AGCAGTTTTCTCCTACTGGATCAGT
LOC_Os02g30190
OsAffx.2803.1.S1_at--1148--9871Chr02:17944044..17944068 (25 bp)
TACATTCGGGAACTGGTCAGCCGCA
LOC_Os02g30190
OsAffx.2803.1.S1_at--301--1791Chr02:17944075..17944099 (25 bp)
ACCCCGTACACGCAGAAGTTTGAGA
LOC_Os02g30190
OsAffx.2803.1.S1_at--1114--7711Chr02:17944129..17944153 (25 bp)
GGTGTTTACTCCAACCCAAATGAAG
LOC_Os02g30190
OsAffx.2803.1.S1_at--392--9871Chr02:17944429..17944453 (25 bp)
TACAGGTCAGCTGGGATGCAGACTC
LOC_Os02g30190
OsAffx.2803.1.S1_at--108--10091Chr02:17944458..17944482 (25 bp)
TAGGAAGGCCTCTTCATCTGATGGC
LOC_Os02g30190
OsAffx.2803.1.S1_at--630--471Chr02:17944473..17944497 (25 bp)
ATCTGATGGCCGTGTCCCAGTGACT
LOC_Os02g30190
OsAffx.2803.1.S1_at--784--7371Chr02:17944674..17944698 (25 bp)
GTGACTGTACCTCCATTTGGTGATT
LOC_Os02g30190
OsAffx.2803.1.S1_at--149--5331Chr02:17944727..17944751 (25 bp)
GAAGTACACCGGCATTTTTAACAGG
LOC_Os02g30190
OsAffx.2803.1.S1_at--324--6791Chr02:17944752..17944776 (25 bp)
GTTAGGCGTGATAAGCTGACCCCAA
LOC_Os02g30190
OsAffx.2803.1.S1_at--1139--3271Chr02:17944774..17944798 (25 bp)
CAAACTCTTCTGTCAAGCAGCAACC
LOC_Os02g30190
Target Sequence 
AGCAGTTTTCTCCTACTGGATCAGTGTTCGGATCAAACTTGAAGTGGATGACGTCGCAAGGAGGAGTTCCTACATTCGGG
AACTGGTCAGCCGCAGGCGACACCCCGTACACGCAGAAGTTTGAGAACCTGAGAAGGAGCAAGAAAACTGCTACCGGTGT
TTACTCCAACCCAAATGAAGTGATCACTGAAACACCTGATCAGCCTCCTCCTCCTCTCAGGTCACCACTGCATCCATCCT
CTCATGATGCCCTGAACCAAAGGCAGAGGTACAGGTCAGCTGGGATGCAGACTCCAGATAGGAAGGCCTCTTCATCTGAT
GGCCGTGTCCCAGTGACTCCAGGAAGGAGCAGGTTGAAGCAAGGAGGCAGAGGCTTTGAACCTGCTTTAGATGAAGTGAC
TGTACCTCCATTTGGTGATTGGGATGATGCTAATGCGGCATCTGGGGAGAAGTACACCGGCATTTTTAACAGGGTTAGGC
GTGATAAGCTGACCCCAAACTCTTCTGTCAAGCAGCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis