Browse Element(s) Details


Os.53579.1.S1_at

Description gb:AK073398.1
DB_XREF= gi:32983421
TID=Os.53579.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53579 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033045F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033045F02, full insert sequence.
FL= gb:AK073398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3024011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30200Os.52877.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_x_at10/112+17946161..17951487expressed protein
LOC_Os02g30200OsAffx.12286.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.52877.1.S1_at10/112+17946161..17951487expressed protein
LOC_Os02g30200Os.6862.2.A1_at1/112+17946161..17951487expressed protein
LOC_Os02g30210Os.28039.1.S1_at11/112+17952646..17955834beta scruin, putative, expressed
LOC_Os02g30219NANA2+17968142..17968511NA
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30240Os.53579.1.S1_at11/112+17975638..17976666expressed protein
LOC_Os02g30250OsAffx.24509.1.S1_at10/112+17978830..17980172hypothetical protein
LOC_Os02g30260OsAffx.2804.1.S1_at11/112+17992391..17993035hypothetical protein
LOC_Os02g30270OsAffx.14013.1.S1_at10/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.29554.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.31267.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270Os.57082.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30280OsAffx.24510.2.S1_at11/112+17999296..18000507hypothetical protein
LOC_Os02g30280OsAffx.24510.1.S1_x_at1/112+17999296..18000507hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53579.1.S1_at--283--1771Chr02:17976202..17976226 (25 bp)
ACCTGAGTGGCATCCACCTTGTCGG
LOC_Os02g30240
Os.53579.1.S1_at--469--9111Chr02:17976151..17976175 (25 bp)
TGCTGCATAGCCTGCCGAGCTTCGT
LOC_Os02g30240
Os.53579.1.S1_at--961--7231Chr02:17975906..17975930 (25 bp)
GTCGCCGACGTATTCATCCGGAGGT
LOC_Os02g30240
Os.53579.1.S1_at--1127--111Chr02:17975895..17975919 (25 bp)
ATTCATCCGGAGGTTCCACGAGCAG
LOC_Os02g30240
Os.53579.1.S1_at--407--5411Chr02:17975868..17975892 (25 bp)
GAAGCTGCAGAAGCTCGAGTCCTTC
LOC_Os02g30240
Os.53579.1.S1_at--852--3811Chr02:17975835..17975859 (25 bp)
CTGCGAGATGCTCGACAGGAGCTAA
LOC_Os02g30240
Os.53579.1.S1_at--792--9791Chr02:17975798..17975822 (25 bp)
TAAGCCATCGATTTAGTGAGAATTT
LOC_Os02g30240
Os.53579.1.S1_at--74--5011Chr02:17975773..17975797 (25 bp)
GCATGGTACTAAGGCAGAGTCTGAG
LOC_Os02g30240
Os.53579.1.S1_at--519--751Chr02:17975712..17975736 (25 bp)
ATGTACTCATGCTCTTTCGTTTTAG
LOC_Os02g30240
Os.53579.1.S1_at--213--5211Chr02:17975683..17975707 (25 bp)
GAATTGATGTACCAACACGAGTCCT
LOC_Os02g30240
Os.53579.1.S1_at--927--6951Chr02:17975675..17975699 (25 bp)
GTACCAACACGAGTCCTAATGAAGG
LOC_Os02g30240
Target Sequence 
ACCTGAGTGGCATCCACCTTGTCGGCGGCGGCGGTTACAGGAAGGCCGCCGTGCTGCATAGCCTGCCGAGCTTCGTGGTG
GAGCAGGAGAGGAGCGCCGTCGTGCTGCTCAGCAGCCTGCCGAGCTTCGCCATGGACAGGGACGTCTACGGCGGCGGCGG
CGAGGCGGAGGCGGAGGAGGAGCAAGGAGTGGGTGGGAAGCAGCAGCAGCAGTCGGTGATCGAGCTGGCGCGCGGCGCGG
CCGCTGCGGAGGCAGGCGGCGGCGCGGAGTTCAGGCTGGAGGACGAAATCGACCACGTCGCCGACGTATTCATCCGGAGG
TTCCACGAGCAGATGAAGCTGCAGAAGCTCGAGTCCTTCAAGAGGCTCTGCGAGATGCTCGACAGGAGCTAATTTAATTT
AAACTAAGCCATCGATTTAGTGAGAATTTGCATGGTACTAAGGCAGAGTCTGAGGGCGTAATTAGAATAAGTGACGATGG
AACTATATGTATGTACTCATGCTCTTTCGTTTTAGAGGAGAATTGATGTACCAACACGAGTCCTAATGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis