Browse Element(s) Details


OsAffx.24510.2.S1_at

Description tigr:9630.m02897
TID=OsAffx.24510.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3028011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30240Os.53579.1.S1_at11/112+17975638..17976666expressed protein
LOC_Os02g30250OsAffx.24509.1.S1_at10/112+17978830..17980172hypothetical protein
LOC_Os02g30260OsAffx.2804.1.S1_at11/112+17992391..17993035hypothetical protein
LOC_Os02g30270OsAffx.14013.1.S1_at10/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.29554.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.31267.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270Os.57082.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30280OsAffx.24510.2.S1_at11/112+17999296..18000507hypothetical protein
LOC_Os02g30280OsAffx.24510.1.S1_x_at1/112+17999296..18000507hypothetical protein
LOC_Os02g30290Os.41695.5.S1_x_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.5300.2.S1_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.17065.1.A1_s_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290Os.6094.1.S1_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30300OsAffx.2806.1.S1_at11/112+18019852..18021562MYND finger family protein, expressed
LOC_Os02g30300OsAffx.2806.1.S1_x_at11/112+18019852..18021562MYND finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24510.2.S1_at--1040--4091Chr02:18000075..18000099 (25 bp)
CGACGGCCATCAGTTTCAGTCCATT
LOC_Os02g30280
OsAffx.24510.2.S1_at--1028--10531Chr02:18000089..18000113 (25 bp)
TTCAGTCCATTCTTGTTGCCGTAAA
LOC_Os02g30280
OsAffx.24510.2.S1_at--16--5471Chr02:18000117..18000141 (25 bp)
GAACGGAGATCACGAAGACGACAAC
LOC_Os02g30280
OsAffx.24510.2.S1_at--500--6111Chr02:18000178..18000202 (25 bp)
GAGTGCGTCGCCGAAGATTCAGACG
LOC_Os02g30280
OsAffx.24510.2.S1_at--286--1651Chr02:18000205..18000229 (25 bp)
AGCGAGATGCACTCCATCGAGCTGA
LOC_Os02g30280
OsAffx.24510.2.S1_at--902--511Chr02:18000220..18000244 (25 bp)
ATCGAGCTGAACGTGGACGGGAACA
LOC_Os02g30280
OsAffx.24510.2.S1_at--263--7511Chr02:18000232..18000256 (25 bp)
GTGGACGGGAACAGCAAGGACTACA
LOC_Os02g30280
OsAffx.24510.2.S1_at--987--951Chr02:18000248..18000272 (25 bp)
AGGACTACAGCTGGAGCTACACCAC
LOC_Os02g30280
OsAffx.24510.2.S1_at--302--9871Chr02:18000265..18000289 (25 bp)
TACACCACGGCTTCCAAGGACATGA
LOC_Os02g30280
OsAffx.24510.2.S1_at--399--3471Chr02:18000321..18000345 (25 bp)
CATCGACCGGCGATCGCAGGAAGGC
LOC_Os02g30280
OsAffx.24510.2.S1_at--1027--891Chr02:18000428..18000452 (25 bp)
AGGCGATCAAGAACCTGAGGGAGCA
LOC_Os02g30280
Target Sequence 
CGACGGCCATCAGTTTCAGTCCATTCTTGTTGCCGTAAACAAGAACGGAGATCACGAAGACGACAACGACGGCGACGAAG
AAGACGACGGCGGTGGCCGCGGCGAGTGCGTCGCCGAAGATTCAGACGGCAGCGAGATGCACTCCATCGAGCTGAACGTG
GACGGGAACAGCAAGGACTACAGCTGGAGCTACACCACGGCTTCCAAGGACATGACGACGACGGCGAGGTCCAAGAACGC
CGCCGCCATCGACCGGCGATCGCAGGAAGGCGCCGGCGAGGAGGACCGGTGGGACGACGGAGGGTGCAGCGAGAGGAGCA
AGGATCTGGACGAGGAGGACGCCGAGAGGTACGAGGCGATCAAGAACCTGAGGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24510.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis