Browse Element(s) Details


OsAffx.2806.1.S1_at

Description tigr:9630.m02899
TID=OsAffx.2806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=MYND finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3030011/11MYND finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30270OsAffx.14013.1.S1_at10/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.29554.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.31267.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270Os.57082.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30280OsAffx.24510.2.S1_at11/112+17999296..18000507hypothetical protein
LOC_Os02g30280OsAffx.24510.1.S1_x_at1/112+17999296..18000507hypothetical protein
LOC_Os02g30290Os.41695.5.S1_x_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.5300.2.S1_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.17065.1.A1_s_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290Os.6094.1.S1_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30300OsAffx.2806.1.S1_at11/112+18019852..18021562MYND finger family protein, expressed
LOC_Os02g30300OsAffx.2806.1.S1_x_at11/112+18019852..18021562MYND finger family protein, expressed
LOC_Os02g30310Os.10838.1.S1_a_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.49674.1.S1_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.10838.3.S1_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.50454.1.S2_at5/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2806.1.S1_at--612--4611Chr02:18020372..18020396 (25 bp)
GCGAGCTCGGCCACTGCGTCTCGGA
LOC_Os02g30300
OsAffx.2806.1.S1_at--1076--1971Chr02:18020360..18020384 (25 bp)
ACTGCGTCTCGGACGGCTACGGCGT
LOC_Os02g30300
OsAffx.2806.1.S1_at--668--9231Chr02:18020300..18020324 (25 bp)
TCCAGGCCAACTTCCGCGAGCTGTG
LOC_Os02g30300
OsAffx.2806.1.S1_at--743--5112Chr01:19440129..19440153 (25 bp)
GCACATGTGCCTCCTGAGCGACTAC
NONE
OsAffx.2806.1.S1_at--1012--772Chr01:19440133..19440157 (25 bp)
ATGTGCCTCCTGAGCGACTACGGGT
NONE
OsAffx.2806.1.S1_at--397--9272Chr01:19440140..19440161 (22 bp)
TCCTGAGCGACTACGGGTGCCACGT
NONE
OsAffx.2806.1.S1_at--659--6691Chr02:18020125..18020149 (25 bp)
GTTCCTGGCCGGGTGGTACGCGTCG
LOC_Os02g30300
OsAffx.2806.1.S1_at--977--7991Chr02:18020063..18020087 (25 bp)
GGATGTGCTCGCAGCCCACCTGCGG
LOC_Os02g30300
OsAffx.2806.1.S1_at--71--9051Chr02:18019995..18020019 (25 bp)
TGCAGCGGGGTGATCTACTGCTCCC
LOC_Os02g30300
OsAffx.2806.1.S1_at--1028--5091Chr02:18019954..18019978 (25 bp)
GCACTGGAAGGTGGCGCACAAGAGC
LOC_Os02g30300
OsAffx.2806.1.S1_at--843--9171Chr02:18019922..18019946 (25 bp)
TGCCGATGGCGCACTGGCTCGTCGC
LOC_Os02g30300
Target Sequence 
GCGAGCTCGGCCACTGCGTCTCGGACGGCTACGGCGTCCGCCGCTCCCTCTCCGGCGGGCGGCGCCTCCTCATCCAGGCC
AACTTCCGCGAGCTGTGCGCCGCGGTGGCGAACGGCGGGGCCAGGTTCGCCGCGGCGCTGGGGCGCAGCGGCGAGTGCAA
GCCGCCGGGCCCGCACATGTGCCTCCTGAGCGACTACGGGTGCCACGTCGCCGGCGCGGCGGGGCGGCGCGCGCACGCGG
CGAACGCGTTCCTGGCCGGGTGGTACGCGTCGCGGCCGCTGGCGTCCGGCGCCGGCGCCGCGGCGCTCCGGATGTGCTCG
CAGCCCACCTGCGGGCGGCCGGAGACGCGGAAGCACGAGTTCCGGCGGTGCTCCGTGTGCAGCGGGGTGATCTACTGCTC
CCGCGCGTGCCAGGCGATGCACTGGAAGGTGGCGCACAAGAGCGCGTGCGTGCCGATGGCGCACTGGCTCGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis