Browse Element(s) Details


Os.49674.1.S1_at

Description gb:AK109318.1
DB_XREF= gi:32994527
TID=Os.49674.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-G10, full insert sequence.
FL= gb:AK109318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3031011/11Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30290Os.41695.5.S1_x_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.5300.2.S1_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.17065.1.A1_s_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290Os.6094.1.S1_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30300OsAffx.2806.1.S1_at11/112+18019852..18021562MYND finger family protein, expressed
LOC_Os02g30300OsAffx.2806.1.S1_x_at11/112+18019852..18021562MYND finger family protein, expressed
LOC_Os02g30310Os.10838.1.S1_a_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.49674.1.S1_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.10838.3.S1_at11/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30310Os.50454.1.S2_at5/112+18033258..18043985Ubiquitin-activating enzyme E1-domain containing protein 1, putative, expressed
LOC_Os02g30320Os.27642.1.S1_at11/112+18053162..18054105expressed protein
LOC_Os02g30320Os.55374.1.S1_s_at11/112+18053162..18054105expressed protein
LOC_Os02g30330OsAffx.12287.1.S1_at11/112+18062387..18064187hypothetical protein
LOC_Os02g30330OsAffx.12287.1.S1_s_at11/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.54560.1.S1_x_at4/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.10263.1.S1_at2/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.45902.1.A1_x_at1/112+18062387..18064187hypothetical protein
LOC_Os02g30330Os.51841.1.S1_x_at1/112+18062387..18064187hypothetical protein
LOC_Os02g30340NANA2+18066311..18068836retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016925biological_processprotein sumoylation
GO:0003824molecular_functioncatalytic activity
GO:0019948molecular_functionSUMO activating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49674.1.S1_at--9--551Chr02:18033846..18033870 (25 bp)
ATCGCCATCGTTGTAAGCACAGCTC
LOC_Os02g30310
Os.49674.1.S1_at--568--2151Chr02:18033864..18033888 (25 bp)
ACAGCTCCTGCTCAATATTGCTTTG
LOC_Os02g30310
Os.49674.1.S1_at--761--4431Chr02:18033894..18033918 (25 bp)
GCCATATTAGCTTAACCTACCTTCT
LOC_Os02g30310
Os.49674.1.S1_at--138--10431Chr02:18033960..18033984 (25 bp)
TTATATGTGACCCTACCTTCTGAAG
LOC_Os02g30310
Os.49674.1.S1_at--1002--871Chr02:18033995..18034019 (25 bp)
AGGCCTCTAAACCTGCCGTGAAAGA
LOC_Os02g30310
Os.49674.1.S1_at--92--191Chr02:18034100..18034124 (25 bp)
ATTTATTCTCACCTGCACTTGGCAG
LOC_Os02g30310
Os.49674.1.S1_at--17--5911Chr02:18034128..18034152 (25 bp)
GAGCTTTCAGAATTACCCCTTTCAG
LOC_Os02g30310
Os.49674.1.S1_at--321--10331Chr02:18034147..18034171 (25 bp)
TTTCAGAGCTTCCAGAATTACCCCT
LOC_Os02g30310
Os.49674.1.S1_at--820--9951Chr02:18034165..18034189 (25 bp)
TACCCCTTTCAGTCTTACAAACATA
LOC_Os02g30310
Os.49674.1.S1_at--237--5611Chr02:18034201..18034225 (25 bp)
GACAATGTTGTCAGGTTCTCGGTTC
LOC_Os02g30310
Os.49674.1.S1_at--575--711Chr02:18034259..18034283 (25 bp)
ATGATGGTTTGTTTGGCTTCTTGAA
LOC_Os02g30310
Target Sequence 
ATCGCCATCGTTGTAAGCACAGCTCCTGCTCAATATTGCTTTGGGACAGCCATATTAGCTTAACCTACCTTCTGAAGGAA
GATTGCATATGCTCAGTGTTAGTTTTGGACAGACTTATATGTGACCCTACCTTCTGAAGGACACACACTAGGCCTCTAAA
CCTGCCGTGAAAGAGTGGTTCAATCGAGTTATTTCGTAAGTCATAATACTTAATTGACAAACATTTTAGTATTAGTTTTA
CCATTAGTTGTCACATTTATTCTCACCTGCACTTGGCAGTAGGAGCTTTCAGAATTACCCCTTTCAGAGCTTCCAGAATT
ACCCCTTTCAGTCTTACAAACATATGGTATGGTTAGACAATGTTGTCAGGTTCTCGGTTCTCTCACTAATACCTGATTAA
ATGGGCAAGACCGATGATGGTTTGTTTGGCTTCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis