Browse Element(s) Details


OsAffx.14013.1.S1_at

Description tigr:9630.m02896
TID=OsAffx.14013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3027010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30230Os.8406.1.S1_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30230Os.8406.1.S2_at11/112+17969446..17975001Exo70 exocyst complex subunit family protein, expressed
LOC_Os02g30240Os.53579.1.S1_at11/112+17975638..17976666expressed protein
LOC_Os02g30250OsAffx.24509.1.S1_at10/112+17978830..17980172hypothetical protein
LOC_Os02g30260OsAffx.2804.1.S1_at11/112+17992391..17993035hypothetical protein
LOC_Os02g30270OsAffx.14013.1.S1_at10/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.29554.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270OsAffx.31267.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30270Os.57082.1.S1_at1/112+17994511..17998120hypothetical protein
LOC_Os02g30280OsAffx.24510.2.S1_at11/112+17999296..18000507hypothetical protein
LOC_Os02g30280OsAffx.24510.1.S1_x_at1/112+17999296..18000507hypothetical protein
LOC_Os02g30290Os.41695.5.S1_x_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.5300.2.S1_at2/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290OsAffx.17065.1.A1_s_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30290Os.6094.1.S1_at1/112+18005548..18013551SWIM zinc finger family protein
LOC_Os02g30300OsAffx.2806.1.S1_at11/112+18019852..18021562MYND finger family protein, expressed
LOC_Os02g30300OsAffx.2806.1.S1_x_at11/112+18019852..18021562MYND finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14013.1.S1_at--203--2052Chr03:25264241..25264265 (25 bp)
ACTTGACTCGGAGATGGGTTCACGA
NONE
OsAffx.14013.1.S1_at--861--9012Chr03:25264216..25264240 (25 bp)
TGCAAGGAGGATTCGACCACGGCTT
NONE
OsAffx.14013.1.S1_at--626--5852Chr03:25264203..25264226 (24 bp)
GACCACGGCTTAAGGAGTTCATCTC
NONE
OsAffx.14013.1.S1_at--1085--6731Chr02:17996137..17996161 (25 bp)
GTTCATCTCAGATCAGACTTACACA
LOC_Os02g30270
OsAffx.14013.1.S1_at--1079--10451Chr02:17996119..17996143 (25 bp)
TTACACATGTGGGTCGAGTCGGATC
LOC_Os02g30270
OsAffx.14013.1.S1_at--262--4411Chr02:17996088..17996112 (25 bp)
GCCAGAATCTGTGTCGCCTTGAAAC
LOC_Os02g30270
OsAffx.14013.1.S1_at--1126--7231Chr02:17996076..17996100 (25 bp)
GTCGCCTTGAAACGTGAGGACCAAT
LOC_Os02g30270
OsAffx.14013.1.S1_at--730--7351Chr02:17996063..17996087 (25 bp)
GTGAGGACCAATACCGAGAAGACTT
LOC_Os02g30270
OsAffx.14013.1.S1_at--1128--2191Chr02:17996034..17996058 (25 bp)
ACAACAGGAAGACTCAAGCTTTGGA
LOC_Os02g30270
OsAffx.14013.1.S1_at--1046--2691Chr02:17996019..17996043 (25 bp)
AAGCTTTGGAAGACACATCTCGGCA
LOC_Os02g30270
OsAffx.14013.1.S1_at--989--3391NONE
CAGCTTGTGTTCGACAGGAGATCAT
NONE
Target Sequence 
ACTTGACTCGGAGATGGGTTCACGATGCAAGGAGGATTCGACCACGGCTTAAGGAGTTCATCTCAGATCAGACTTACACA
TGTGGGTCGAGTCGGATCGATGAGGCCAGAATCTGTGTCGCCTTGAAACGTGAGGACCAATACCGAGAAGACTTAACAAC
AACAGGAAGACTCAAGCTTTGGAAGACACATCTCGGCAGGGGTGTACTGCAGCTTGTGTTCGACAGGAGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis