Browse Element(s) Details


OsAffx.28048.2.S1_at

Description tigr:9631.m03919
TID=OsAffx.28048.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g107501/11hypothetical protein
LOC_Os06g416301/11hypothetical protein
LOC_Os04g081701/11NAF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10730OsAffx.24189.1.S1_at11/112+5654435..5655458expressed protein
LOC_Os02g10740OsAffx.24190.1.S1_at11/112+5663557..5668337Mitochondrial carrier protein, expressed
LOC_Os02g10750OsAffx.28048.1.S1_at10/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10750OsAffx.28048.2.S1_x_at1/112+5670091..5672334hypothetical protein
LOC_Os02g10770Os.50235.1.S1_a_at11/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770Os.50235.2.S1_at10/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10770OsAffx.14035.1.S1_at1/112+5686730..5697834DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os02g10760NANA2+5688749..5689589AP2 domain-containing transcription factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28048.2.S1_at--980--4771Chr03:22605808..22605947 (25 bp)
GCTCCGGCGCTCTGGAATAAGTTCA
NONE
OsAffx.28048.2.S1_at--1132--9271Chr03:22605806..22605945 (25 bp)
TCCGGCGCTCTGGAATAAGTTCACT
NONE
OsAffx.28048.2.S1_at--389--851Chr03:22605130..22605154 (25 bp)
ATGGCAATGCCGCCCGAGGTCTGCA
NONE
OsAffx.28048.2.S1_at--1096--9152Chr06:24927957..24928007 (25 bp)
TGCCGCCCGAGGTCTGCACGCGGTT
LOC_Os06g41630
OsAffx.28048.2.S1_at--1079--1011Chr03:22605114..22605138 (25 bp)
AGGTCTGCACGCGGTTCCACCTAAT
NONE
OsAffx.28048.2.S1_at--71--3951Chr03:22605103..22605127 (25 bp)
CGGTTCCACCTAATCTCCCTGTCTG
NONE
OsAffx.28048.2.S1_at--750--8811Chr03:22605047..22605071 (25 bp)
TGACCCCGCCGTGTCGCCAGGGCGA
NONE
OsAffx.28048.2.S1_at--204--3251Chr03:22604976..22605000 (25 bp)
CAAGCGGCGTGGTCACGCAGCTAGA
NONE
OsAffx.28048.2.S1_at--17--7111Chr03:22604965..22604989 (25 bp)
GTCACGCAGCTAGAGGCGCTCGCGA
NONE
OsAffx.28048.2.S1_at--441--1573Chr04:4333164..4333183 (20 bp)
AGCTAGAGGCGCTCGCGACGGGCGG
LOC_Os04g08170
OsAffx.28048.2.S1_at--898--3491Chr03:22604882..22604906 (25 bp)
CATGGCGGCCGATCGACGTCTTCAG
NONE
Target Sequence 
GCTCCGGCGCTCTGGAATAAGTTCACTTTAGGTCCCTCTATTTGTCGTCCAGTCCGATTTTCGTCCCTTGACCGTAAAAC
CGGCGGACGGCGTGGGTGGGAGGCGGAGCAGGCGAGCTCCGGCGGTGGCGGAGGGCGTGGTCGGCACCGCCCCCTGACCG
GAGCACCACCGGTCCGCGTGAAGGCAGATCTGGGGAGCGCCCGTCCCGCGCCCCATCATCGCCGACCCCGTGCCGACGCC
GGTACACGCATGGCAATGCCGCCCGAGGTCTGCACGCGGTTCCACCTAATCTCCCTGTCTGAGGGCTTCGACCTGTCGTC
GCTGTTCGAGCATGACCCCGCCGTGTCGCCAGGGCGAGCCACGGCGCGCGCGGGCAGCACGCGGTTCGCGACACGGGAGG
CGGCAAGCGGCGTGGTCACGCAGCTAGAGGCGCTCGCGACGGGCGGCGCCACGCCCACGCGCGTGGCGAGGAGCGGCGCG
CGCGGGGTGCGGCTCGCCATGGCGGCCGATCGACGTCTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28048.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis