Browse Element(s) Details


OsAffx.2808.1.S1_s_at

Description tigr:9630.m02910
TID=OsAffx.2808.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3041010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30370NANA2+18078705..18082394transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30380Os.55235.1.S1_at11/112+18086117..18087002expressed protein
LOC_Os02g30390OsAffx.23366.1.S1_at1/112+18093017..18096582transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30390OsAffx.23366.2.S1_s_at1/112+18093017..18096582transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30400Os.46314.3.S1_at3/112+18099911..18102676transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30400OsAffx.8264.1.S1_at1/112+18099911..18102676transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30410Os.49228.1.S1_at11/112+18104577..18108083expressed protein
LOC_Os02g30410Os.56237.1.S1_at11/112+18104577..18108083expressed protein
LOC_Os02g30410OsAffx.2808.1.S1_s_at10/112+18104577..18108083expressed protein
LOC_Os02g30420OsAffx.19073.1.S1_x_at1/112+18114347..18115253expressed protein
LOC_Os02g30430NANA2+18122624..18123385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30440OsAffx.24511.1.S1_at11/112+18124910..18125295hypothetical protein
LOC_Os02g30450OsAffx.12289.1.S1_at11/112+18131447..18132199Harpin-induced protein 1 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2808.1.S1_s_at--1012--7811Chr02:18106279..18106303 (25 bp)
GGTAAATACATATCCTACAGTTAGA
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--546--6171Chr02:18106326..18106350 (25 bp)
GAGGAGATGATTTTGTCCAGGCCAT
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--55--10411Chr02:18106336..18106360 (25 bp)
TTTTGTCCAGGCCATGGTGGTTGCA
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--485--811Chr02:18106349..18106373 (25 bp)
ATGGTGGTTGCAGTTGAATCAGTAC
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--423--2751NONE
AAGAACAAATTCCAAAGGCTCAGAT
NONE
OsAffx.2808.1.S1_s_at--1089--2931Chr02:18107034..18107057 (24 bp)
AAGGCTCAGATTTCCCATAAAGTGT
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--423--6531Chr02:18107041..18107065 (25 bp)
GATTTCCCATAAAGTGTCGTCGAAG
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--1054--8751Chr02:18107074..18107098 (25 bp)
TGTTTCTGTAAAAATTGGGCCCATT
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--748--31Chr02:18107087..18107111 (25 bp)
ATTGGGCCCATTCCTGTGGTTTCCA
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--482--3591Chr02:18107095..18107119 (25 bp)
CATTCCTGTGGTTTCCAGCGAGCAG
LOC_Os02g30410
OsAffx.2808.1.S1_s_at--464--3391Chr02:18107110..18107248 (25 bp)
CAGCGAGCAGGTCCAAGCAGTGTAT
LOC_Os02g30410
Target Sequence 
GGTAAATACATATCCTACAGTTAGAGGATTTACTGCAATTGGTACTGGAGGAGATGATTTTGTCCAGGCCATGGTGGTTG
CAGTTGAATCAGTACTGGAAGAACAAATTCCAAAGGCTCAGATTTCCCATAAAGTGTCGTCGAAGGGGAAATATGTTTCT
GTAAAAATTGGGCCCATTCCTGTGGTTTCCAGCGAGCAGGTCCAAGCAGTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2808.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis