Browse Element(s) Details


OsAffx.28117.1.S1_at

Description tigr:9634.m04415
TID=OsAffx.28117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4545011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45410Os.50003.1.S1_at11/116+27455060..27458560myb family transcription factor-related protein, putative, expressed
LOC_Os06g45420OsAffx.15937.1.S1_at11/116+27461108..27462017hypothetical protein
LOC_Os06g45430Os.4719.1.S1_at11/116+27465368..27468861LEM3 family/CDC50 family protein, expressed
LOC_Os06g45440Os.17920.1.S1_at11/116+27468979..27470808haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os06g45450OsAffx.28117.1.S1_at11/116+27472218..27473452hypothetical protein
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein
LOC_Os06g45470OsAffx.5115.1.S1_at11/116+27492243..27492452hypothetical protein
LOC_Os06g45480Os.11403.1.S1_at11/116+27494298..27498534peptidase M20/M25/M40 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28117.1.S1_at--775--9611Chr06:27473393..27473415 (23 bp)
TCATCCTCTCCATTCAATGTGGTGG
LOC_Os06g45450
OsAffx.28117.1.S1_at--183--8071Chr06:27473206..27473230 (25 bp)
GGAGCAAATGGCACCTCAAGAGAGT
LOC_Os06g45450
OsAffx.28117.1.S1_at--398--8251Chr06:27473197..27473221 (25 bp)
GGCACCTCAAGAGAGTACTCACCGT
LOC_Os06g45450
OsAffx.28117.1.S1_at--474--2771Chr06:27473189..27473213 (25 bp)
AAGAGAGTACTCACCGTTGCCACCG
LOC_Os06g45450
OsAffx.28117.1.S1_at--955--1771Chr06:27473177..27473201 (25 bp)
ACCGTTGCCACCGTTCAAAGACGTG
LOC_Os06g45450
OsAffx.28117.1.S1_at--918--6751Chr06:27473165..27473189 (25 bp)
GTTCAAAGACGTGGTGGGCCCATCA
LOC_Os06g45450
OsAffx.28117.1.S1_at--987--3251Chr06:27473162..27473186 (25 bp)
CAAAGACGTGGTGGGCCCATCAACT
LOC_Os06g45450
OsAffx.28117.1.S1_at--584--511Chr06:27473018..27473042 (25 bp)
ATCGATCGCGCCAGCTGGAAACCCA
LOC_Os06g45450
OsAffx.28117.1.S1_at--1109--9411Chr06:27472816..27472840 (25 bp)
TCGGGCGCGGACTGCGACATGGTGG
LOC_Os06g45450
OsAffx.28117.1.S1_at--823--2472Chr09:22284170..22284245 (25 bp)
AACAGCTACTGGCAGCGCACCAAGG
NONE
OsAffx.28117.1.S1_at--31--3531Chr06:27472670..27472694 (25 bp)
CATGCTCATCACCAAGGATCCCAGT
LOC_Os06g45450
Target Sequence 
TCATCCTCTCCATTCAATGTGGTGGAGCAAATGGCACCTCAAGAGAGTACTCACCGTTGCCACCGTTCAAAGACGTGGTG
GGCCCATCAACTCCGGTCGCCGCCGACGACGTTCCGCCGCCGCCGTACTGCGTGTACCCTCCTCCTCCTACCAAGCCGGC
TCTTCCGGCCCCCGCTGCCGCCGACGCCGGCGAGCCCCGGCGACTCGCCGCCATCGATCGCGCCAGCTGGAAACCCACCG
ACGCCGGCGCAGGCCGGTGCGCCGCCGCCATCGATCGCGCCGGGAACGGGAAGCCCGCCGCCAGCAACGACGACGCCGCC
GGCGCCGGGGGCGAGGGAGGCGGGGGTGTGACGGCGATGGACTACGCGTGCGCGTCGGGCGCGGACTGCGACATGGTGGC
GGCGCCTGGGGCGCCGTGCTTCCTGCCGGACACGCTCATGGCGCACGCCTCCTACGCCTTCAACAGCTACTGGCAGCGCA
CCAAGGTCGCCGGCGGCACGTGCGACTTCGCCGGCGCCGCCATGCTCATCACCAAGGATCCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis