Browse Element(s) Details


OsAffx.28118.1.S1_at

Description tigr:9634.m04419
TID=OsAffx.28118.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g454908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45460OsAffx.5114.1.S1_at11/116+27479085..27480390F-box domain containing protein
LOC_Os06g45470OsAffx.5115.1.S1_at11/116+27492243..27492452hypothetical protein
LOC_Os06g45480Os.11403.1.S1_at11/116+27494298..27498534peptidase M20/M25/M40 family protein, putative, expressed
LOC_Os06g45490OsAffx.28118.1.S1_at8/116+27504349..27505654hypothetical protein
LOC_Os06g45490OsAffx.25317.1.S1_at1/116+27504349..27505654hypothetical protein
LOC_Os06g45500NANA6+27516402..27522535Copper-transporting ATPase RAN1, putative, expressed
LOC_Os06g45510OsAffx.15938.1.S1_s_at11/116+27529120..27531711Thioredoxin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28118.1.S1_at--911--791NONE
ATGGGAGTGCGGCAATGCCACATCA
NONE
OsAffx.28118.1.S1_at--527--6111NONE
GAGTGCGGCAATGCCACATCAACAT
NONE
OsAffx.28118.1.S1_at--24--7311NONE
GTGCGGCAATGCCACATCAACATCA
NONE
OsAffx.28118.1.S1_at--887--371Chr06:27504441..27504465 (25 bp)
ATCAACATCATGCAGGTGAAATCCG
LOC_Os06g45490
OsAffx.28118.1.S1_at--236--2091Chr06:27504437..27504461 (25 bp)
ACATCATGCAGGTGAAATCCGCCTT
LOC_Os06g45490
OsAffx.28118.1.S1_at--960--411Chr06:27504435..27504459 (25 bp)
ATCATGCAGGTGAAATCCGCCTTGG
LOC_Os06g45490
OsAffx.28118.1.S1_at--219--3531Chr06:27504433..27504457 (25 bp)
CATGCAGGTGAAATCCGCCTTGGTT
LOC_Os06g45490
OsAffx.28118.1.S1_at--656--9051Chr06:27504431..27504455 (25 bp)
TGCAGGTGAAATCCGCCTTGGTTTG
LOC_Os06g45490
OsAffx.28118.1.S1_at--505--11Chr06:27504415..27504439 (25 bp)
CTTGGTTTGGCCTAAGCAGGGTAAG
LOC_Os06g45490
OsAffx.28118.1.S1_at--230--10751Chr06:27504409..27504433 (25 bp)
TTGGCCTAAGCAGGGTAAGGTAAAT
LOC_Os06g45490
OsAffx.28118.1.S1_at--209--9811Chr06:27504379..27504403 (25 bp)
TAAAAAGCTAAGGAGGTGTCGATAC
LOC_Os06g45490
Target Sequence 
ATGGGAGTGCGGCAATGCCACATCAACATCATGCAGGTGAAATCCGCCTTGGTTTGGCCTAAGCAGGGTAAGGTAAATGG
TATTAAAAAGCTAAGGAGGTGTCGATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis