Browse Element(s) Details


OsAffx.28145.1.S1_at

Description tigr:9634.m04590
TID=OsAffx.28145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4712011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47060OsAffx.15962.1.S1_at11/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_at2/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_x_at1/116+28530612..28532532hypothetical protein
LOC_Os06g47070OsAffx.30013.1.S1_x_at2/116+28537704..28538273hypothetical protein
LOC_Os06g47080OsAffx.828.1.S1_x_at1/116+28539405..28540139retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47090OsAffx.30013.5.S1_x_at11/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_x_at3/116+28541584..28542121hypothetical protein
LOC_Os06g47090Os.56292.1.S1_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47090OsAffx.30013.1.S1_x_at1/116+28541584..28542121hypothetical protein
LOC_Os06g47100OsAffx.15963.1.S1_at11/116+28546658..28548833F-box domain containing protein, expressed
LOC_Os06g47110OsAffx.15964.1.S1_at11/116+28550662..28552713COBRA-like protein 11 precursor, putative, expressed
LOC_Os06g47120OsAffx.28145.1.S1_at11/116+28554885..28556849hypothetical protein
LOC_Os06g47130OsAffx.5133.1.S1_at11/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47130Os.11931.1.S1_s_at11/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47130Os.31991.1.S1_at2/116+28557353..28563764C2 domain-containing protein, putative, expressed
LOC_Os06g47140NANA6+28576702..28578098hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28145.1.S1_at--739--5511Chr06:28555664..28555688 (25 bp)
GAAAATTCGTTCAAACGCCTCCCAG
LOC_Os06g47120
OsAffx.28145.1.S1_at--1088--10551Chr06:28555490..28555626 (25 bp)
TTCTCTCCGGGCTGTAACTGTGGCG
LOC_Os06g47120
OsAffx.28145.1.S1_at--1042--10851Chr06:28555405..28555429 (25 bp)
TTGGAACCGATCAACCTCAGTGACG
LOC_Os06g47120
OsAffx.28145.1.S1_at--804--1111Chr06:28555387..28555411 (25 bp)
AGTGACGTTCGTCGATTCCTGAACA
LOC_Os06g47120
OsAffx.28145.1.S1_at--960--1571Chr06:28555192..28555359 (25 bp)
AGCTCTTTGTGCAGCTCCCAGAAAG
LOC_Os06g47120
OsAffx.28145.1.S1_at--886--6571Chr06:28555166..28555190 (25 bp)
GATTGCACATACACGGAGAACACTA
LOC_Os06g47120
OsAffx.28145.1.S1_at--1136--2971Chr06:28555058..28555082 (25 bp)
AATGAGATTCGGCTGCTGCAGTTTC
LOC_Os06g47120
OsAffx.28145.1.S1_at--628--6752Chr09:10764896..10764918 (22 bp)
GTTCAAGAAGGCCAAACTCCTCCAG
NONE
OsAffx.28145.1.S1_at--437--1451Chr06:28555009..28555033 (25 bp)
AGAAGCTGATACTAGTTCGTCCCAT
LOC_Os06g47120
OsAffx.28145.1.S1_at--940--10591Chr06:28554994..28555018 (25 bp)
TTCGTCCCATACCAGTACCGGTAGA
LOC_Os06g47120
OsAffx.28145.1.S1_at--732--10631Chr06:28554949..28554973 (25 bp)
TTCCCGCAAATGTCCAGCTAACTGA
LOC_Os06g47120
Target Sequence 
GAAAATTCGTTCAAACGCCTCCCAGATCTCTCGAACCTCACCTTCCTCACCCTGTGCAGCACTTCTCTCCGGGCTGTAAC
TGTGGCGGGTAATACCATTCAGACAAACTTGAGGAGTTTAAGAGAGCTTCAGTTGCTCATGTTCAAATTGGAACCGATCA
ACCTCAGTGACGTTCGTCGATTCCTGAACACCTGCGGCTACTACCCTCAGCTGACGAAGCTCTTTGTGCAGCTCCCAGAA
AGAGATTGCACATACACGGAGAACACTAGCTCAGAGAATGTGGAGGGGGAACAACAGGATGGCTTCGAAAAGCTTGATGT
GGTAAAGATGACGAACTTCAAGTACGACTGGAATGAGATTCGGCTGCTGCAGTTTCTGTTCAAGAAGGCCAAACTCCTCC
AGAAGCTGATACTAGTTCGTCCCATACCAGTACCGGTAGATCGCCCCTTCCGACTCCAGGTTCCCGCAAATGTCCAGCTA
ACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis