Browse Element(s) Details


OsAffx.28151.1.S1_at

Description tigr:9634.m04627
TID=OsAffx.28151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4748011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47430OsAffx.28148.1.S1_x_at11/116+28731634..28733317hypothetical protein
LOC_Os06g47440OsAffx.28149.1.S1_at11/116+28735302..28737622hypothetical protein
LOC_Os06g47450OsAffx.15973.1.S1_at8/116+28741346..28741710hypothetical protein
LOC_Os06g47460NANA6+28741941..28746114hypothetical protein
LOC_Os06g47470OsAffx.28152.2.S1_at11/116+28749201..28756372Protein kinase domain containing protein, expressed
LOC_Os06g47480OsAffx.28151.1.S1_at11/116+28757923..28758357hypothetical protein
LOC_Os06g47490NANA6+28758951..28760043hypothetical protein
LOC_Os06g47500OsAffx.22699.1.S1_x_at2/116+28761362..28761872retrotransposon protein, putative, unclassified
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified
LOC_Os06g47520Os.56282.1.S1_at11/116+28767496..28769448expressed protein
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28151.1.S1_at--740--10071Chr06:28757975..28757999 (25 bp)
TAGTGGACTACTACGCAGATGAGCC
LOC_Os06g47480
OsAffx.28151.1.S1_at--15--2033Chr11:13922942..13922961 (20 bp)
ACTACGCAGATGAGCCGATGGAGGA
NONE
OsAffx.28151.1.S1_at--774--8491Chr06:28758034..28758058 (25 bp)
TGGAAATACCGGGAGGACCCTGGCT
LOC_Os06g47480
OsAffx.28151.1.S1_at--1160--951Chr06:28758047..28758071 (25 bp)
AGGACCCTGGCTTCATGGAGGCATA
LOC_Os06g47480
OsAffx.28151.1.S1_at--488--3911Chr06:28758053..28758077 (25 bp)
CTGGCTTCATGGAGGCATACCTGAA
LOC_Os06g47480
OsAffx.28151.1.S1_at--2--6211Chr06:28758064..28758088 (25 bp)
GAGGCATACCTGAAGGTGATGCAGC
LOC_Os06g47480
OsAffx.28151.1.S1_at--765--651Chr06:28758082..28758106 (25 bp)
ATGCAGCTCGTGGAAGAAGATGATC
LOC_Os06g47480
OsAffx.28151.1.S1_at--104--4091Chr06:28758206..28758230 (25 bp)
CGACGAAGAGGTACAAGTGCAACTA
LOC_Os06g47480
OsAffx.28151.1.S1_at--1156--1111Chr06:28758221..28758245 (25 bp)
AGTGCAACTACTGGGCGGACGACGA
LOC_Os06g47480
OsAffx.28151.1.S1_at--84--1871Chr06:28758242..28758266 (25 bp)
ACGACCCTGCTTACCGCGGCAAGAG
LOC_Os06g47480
OsAffx.28151.1.S1_at--475--8351Chr06:28758269..28758293 (25 bp)
GGCTGGAGAACACCGGCCAGCTCTT
LOC_Os06g47480
Target Sequence 
TAGTGGACTACTACGCAGATGAGCCGATGGAGGAAGACGGTAAAAATAGTAACAACAAGTGGAAATACCGGGAGGACCCT
GGCTTCATGGAGGCATACCTGAAGGTGATGCAGCTCGTGGAAGAAGATGATCGGATCGAGGACGAGGAGAGCGCTGCGGC
GGCGGAGGCGGCGAAGCCAGGGCGGAAGAGGGCTCACGCCCGGAAGGCGGGGGAGCTGGACGACGTGGAGACGACGAAGA
GGTACAAGTGCAACTACTGGGCGGACGACGACCCTGCTTACCGCGGCAAGAGGCGGCTGGAGAACACCGGCCAGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis