Browse Element(s) Details


OsAffx.28152.2.S1_at

Description tigr:9634.m04625
TID=OsAffx.28152.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL161558 serinethreonine kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4747011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47410OsAffx.5136.1.S1_at11/116+28724243..28725531hypothetical protein
LOC_Os06g47410OsAffx.5118.1.S1_x_at3/116+28724243..28725531hypothetical protein
LOC_Os06g47420OsAffx.5118.1.S1_x_at1/116+28725889..28727266transposon protein, putative, unclassified
LOC_Os06g47430OsAffx.28148.1.S1_x_at11/116+28731634..28733317hypothetical protein
LOC_Os06g47440OsAffx.28149.1.S1_at11/116+28735302..28737622hypothetical protein
LOC_Os06g47450OsAffx.15973.1.S1_at8/116+28741346..28741710hypothetical protein
LOC_Os06g47460NANA6+28741941..28746114hypothetical protein
LOC_Os06g47470OsAffx.28152.2.S1_at11/116+28749201..28756372Protein kinase domain containing protein, expressed
LOC_Os06g47480OsAffx.28151.1.S1_at11/116+28757923..28758357hypothetical protein
LOC_Os06g47490NANA6+28758951..28760043hypothetical protein
LOC_Os06g47500OsAffx.22699.1.S1_x_at2/116+28761362..28761872retrotransposon protein, putative, unclassified
LOC_Os06g47510NANA6+28762056..28765012retrotransposon protein, putative, unclassified
LOC_Os06g47520Os.56282.1.S1_at11/116+28767496..28769448expressed protein
LOC_Os06g47530OsAffx.28152.1.S1_s_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28152.1.S1_at11/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47530OsAffx.28150.1.S1_x_at1/116+28769061..28773426Protein kinase domain containing protein, expressed
LOC_Os06g47540OsAffx.28153.1.S1_at10/116+28776683..28778894hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28152.2.S1_at--653--4791Chr06:28751996..28752020 (25 bp)
GCTCCGGAGTATGCATCTCGAGGAG
LOC_Os06g47470
OsAffx.28152.2.S1_at--309--3791Chr06:28751980..28752004 (25 bp)
CTCGAGGAGTTTATTCAGTGAAGAC
LOC_Os06g47470
OsAffx.28152.2.S1_at--505--3451Chr06:28751965..28751989 (25 bp)
CAGTGAAGACGGATGTGTTTAGCTT
LOC_Os06g47470
OsAffx.28152.2.S1_at--1026--10611Chr06:28751942..28751966 (25 bp)
TTCGGTGTCTTGGTTCTAGTGATCA
LOC_Os06g47470
OsAffx.28152.2.S1_at--542--5211Chr06:28751904..28751928 (25 bp)
GAATTCCATACTTTATAAGCAGAGG
LOC_Os06g47470
OsAffx.28152.2.S1_at--69--5051Chr06:28751886..28751910 (25 bp)
GCAGAGGGATGCTATAGGTGATCTT
LOC_Os06g47470
OsAffx.28152.2.S1_at--144--1051Chr06:28751875..28751895 (21 bp)
AGGTGATCTTGTACGGGATGTGTTA
LOC_Os06g47470
OsAffx.28152.2.S1_at--1046--7653Chr12:7885004..7885023 (20 bp)
GGGATGTGTTAATTACTCTGTCTAA
NONE
OsAffx.28152.2.S1_at--19--9831Chr06:28749534..28749554 (21 bp)
TAAAGCTTGGCATATGTGGAGGGAC
LOC_Os06g47470
OsAffx.28152.2.S1_at--49--9751Chr06:28749451..28749475 (25 bp)
TAATTCGGTGCACCCAAGTGGCATT
LOC_Os06g47470
OsAffx.28152.2.S1_at--1007--5071Chr06:28749442..28749466 (25 bp)
GCACCCAAGTGGCATTGCTCTGCAC
LOC_Os06g47470
Target Sequence 
GCTCCGGAGTATGCATCTCGAGGAGTTTATTCAGTGAAGACGGATGTGTTTAGCTTCGGTGTCTTGGTTCTAGTGATCAT
TAGTGGACGAAAGAATTCCATACTTTATAAGCAGAGGGATGCTATAGGTGATCTTGTACGGGATGTGTTAATTACTCTGT
CTAATGGAAGAGAAAAACAAAGGGTATTTAGTGTAATATTGGACTATTCTATAAATTTGAAAAACATAAGAACTAAAGCT
TGGCATATGTGGAGGGACGGAAGGTTGCATGAGCTTGTAGATCCATCATTAGGGAATGTGTATGAACTTGATCAGATAAT
TCGGTGCACCCAAGTGGCATTGCTCTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28152.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis