Browse Element(s) Details


OsAffx.28164.1.S1_at

Description tigr:9634.m04685
TID=OsAffx.28164.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peroxidase ATP22a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g480309/11Peroxidase 16 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48010OsAffx.15978.1.S1_x_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010Os.23271.2.A1_x_at1/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48020Os.53541.1.S1_at11/116+29034688..29037184Peroxidase 45 precursor, putative, expressed
LOC_Os06g48030Os.11547.1.S1_s_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.2.S1_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.1.S1_at9/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030Os.26986.1.A1_at1/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48040Os.14848.1.S1_at11/116+29058707..29062782Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g48050Os.9637.1.S1_at11/116+29067774..29070756expressed protein
LOC_Os06g48060Os.51854.1.S1_at11/116+29071377..29075033ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28164.1.S1_at--640--2531NONE
AACTAGCATGTTTACAGCTGGTCCA
NONE
OsAffx.28164.1.S1_at--469--2031NONE
ACTAGCATGTTTACAGCTGGTCCAG
NONE
OsAffx.28164.1.S1_at--409--3711Chr06:29054151..29054170 (20 bp)
CTAGCATGTTTACAGCTGGTCCAGT
LOC_Os06g48030
OsAffx.28164.1.S1_at--936--10011Chr06:29054151..29054171 (21 bp)
TAGCATGTTTACAGCTGGTCCAGTT
LOC_Os06g48030
OsAffx.28164.1.S1_at--728--1531Chr06:29054151..29054172 (22 bp)
AGCATGTTTACAGCTGGTCCAGTTA
LOC_Os06g48030
OsAffx.28164.1.S1_at--1070--4991Chr06:29054151..29054173 (23 bp)
GCATGTTTACAGCTGGTCCAGTTAA
LOC_Os06g48030
OsAffx.28164.1.S1_at--1058--3491Chr06:29054151..29054174 (24 bp)
CATGTTTACAGCTGGTCCAGTTAAT
LOC_Os06g48030
OsAffx.28164.1.S1_at--6--751Chr06:29054151..29054175 (25 bp)
ATGTTTACAGCTGGTCCAGTTAATC
LOC_Os06g48030
OsAffx.28164.1.S1_at--827--8771Chr06:29054152..29054176 (25 bp)
TGTTTACAGCTGGTCCAGTTAATCA
LOC_Os06g48030
OsAffx.28164.1.S1_at--746--6811Chr06:29054153..29054177 (25 bp)
GTTTACAGCTGGTCCAGTTAATCAA
LOC_Os06g48030
OsAffx.28164.1.S1_at--1147--10331Chr06:29054154..29054178 (25 bp)
TTTACAGCTGGTCCAGTTAATCAAG
LOC_Os06g48030
Target Sequence 
AACTAGCATGTTTACAGCTGGTCCAGTTAATCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis