Browse Element(s) Details


OsAffx.28164.2.S1_at

Description tigr:9634.m04686
TID=OsAffx.28164.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=peroxidase ATP22a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4803011/11Peroxidase 16 precursor, putative, expressed
LOC_Os02g017203/11expressed protein
LOC_Os02g564203/11wall-associated kinase 3, putative, expressed
LOC_Os10g312502/11expressed protein
LOC_Os02g015102/11L-lactate dehydrogenase A, putative, expressed
LOC_Os08g028302/11hypothetical protein
LOC_Os06g229192/11Xyloglucan endotransglucosylase/hydrolase protein 26precursor, putative, expressed
LOC_Os03g414382/11Protein Z, putative, expressed
LOC_Os07g406201/11saccharopine dehydrogenase family protein, expressed
LOC_Os04g531101/11hypothetical protein
LOC_Os01g239701/11serine/threonine kinase, putative
LOC_Os07g410601/11Dihydroflavonol-4-reductase, putative, expressed
LOC_Os05g305401/11retrotransposon protein, putative, unclassified
LOC_Os12g312301/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g357501/11Protein kinase domain containing protein, expressed
LOC_Os09g390701/11Papain family cysteine protease containing protein, expressed
LOC_Os04g513301/11Maltose excess protein 1-like, chloroplast precursor, putative, expressed
LOC_Os08g178301/11transposon protein, putative, unclassified
LOC_Os06g013901/11Acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed
LOC_Os12g175501/11Leucine Rich Repeat family protein, expressed
LOC_Os12g014491/11expressed protein
LOC_Os05g393701/11hypothetical protein
LOC_Os03g366301/11expressed protein
LOC_Os02g167091/11signal peptidase I family protein, expressed
LOC_Os03g494641/11pentatricopeptide, putative, expressed
LOC_Os03g172701/11expressed protein
LOC_Os12g407201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48010OsAffx.15978.1.S1_x_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010OsAffx.15978.1.S1_at11/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48010Os.23271.2.A1_x_at1/116+29026225..29027407Peroxidase 16 precursor, putative
LOC_Os06g48020Os.53541.1.S1_at11/116+29034688..29037184Peroxidase 45 precursor, putative, expressed
LOC_Os06g48030Os.11547.1.S1_s_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.2.S1_at11/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030OsAffx.28164.1.S1_at9/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48030Os.26986.1.A1_at1/116+29050014..29054208Peroxidase 16 precursor, putative, expressed
LOC_Os06g48040Os.14848.1.S1_at11/116+29058707..29062782Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g48050Os.9637.1.S1_at11/116+29067774..29070756expressed protein
LOC_Os06g48060Os.51854.1.S1_at11/116+29071377..29075033ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001676biological_processlong-chain fatty acid metabolism
GO:0005983biological_processstarch catabolism
GO:0006412biological_processprotein biosynthesis
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006508biological_processproteolysis
GO:0006635biological_processfatty acid beta-oxidation
GO:0006952biological_processdefense response
GO:0007154biological_processcell communication
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007275biological_processdevelopment
GO:0009414biological_processresponse to water deprivation
GO:0009598biological_processdetection of pathogenic bacteria
GO:0009629biological_processresponse to gravity
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009809biological_processlignin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0050832biological_processdefense response to fungi
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0005886cellular_componentplasma membrane
GO:0009706cellular_componentchloroplast inner membrane
GO:0016020cellular_componentmembrane
GO:0042579cellular_componentmicrobody
GO:0003723molecular_functionRNA binding
GO:0003779molecular_functionactin binding
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004457molecular_functionlactate dehydrogenase activity
GO:0004601molecular_functionperoxidase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0004867molecular_functionserine-type endopeptidase inhibitor activity
GO:0005363molecular_functionmaltose transporter activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008233molecular_functionpeptidase activity
GO:0008234molecular_functioncysteine-type peptidase activity
GO:0016301molecular_functionkinase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0016615molecular_functionmalate dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0030246molecular_functioncarbohydrate binding
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28164.2.S1_at--554--712Chr06:29053125..29053149 (25 bp)
ATGATGTAAACTAGCGTGGTGGCCC
LOC_Os06g48030
OsAffx.28164.2.S1_at--1089--8832Chr06:29053126..29053150 (25 bp)
TGATGTAAACTAGCGTGGTGGCCCA
LOC_Os06g48030
OsAffx.28164.2.S1_at--30--752Chr06:29053128..29053152 (25 bp)
ATGTAAACTAGCGTGGTGGCCCACG
LOC_Os06g48030
OsAffx.28164.2.S1_at--861--2392Chr06:29053132..29053156 (25 bp)
AAACTAGCGTGGTGGCCCACGCAGA
LOC_Os06g48030
OsAffx.28164.2.S1_at--1063--521224Chr12:8306308..8306332 (25 bp)
GAATTTTCTGTAAATTGTATTTCTA
NONE
OsAffx.28164.2.S1_at--944--2344Chr10:17817549..17817688 (25 bp)
ATATAGACTCTATGCTCTTCTTCTA
NONE
OsAffx.28164.2.S1_at--751--2945Chr11:3650295..3650315 (21 bp)
ATAGACTCTATGCTCTTCTTCTAAT
NONE
OsAffx.28164.2.S1_at--720--139100Chr11:3650295..3650317 (23 bp)
AGACTCTATGCTCTTCTTCTAATAT
NONE
OsAffx.28164.2.S1_at--533--20127Chr11:1450473..1450497 (25 bp)
ACTCTATGCTCTTCTTCTAATATTA
NONE
OsAffx.28164.2.S1_at--433--95533Chr11:3650297..3650321 (25 bp)
TCTATGCTCTTCTTCTAATATTATT
NONE
OsAffx.28164.2.S1_at--516--6326Chr11:3650300..3650324 (25 bp)
ATGCTCTTCTTCTAATATTATTTAT
NONE
Target Sequence 
ATGATGTAAACTAGCGTGGTGGCCCACGCAGATTGCGCGGCTAACATTATTATATTTTCTCTCATATAATAGCATATATG
TTTTCTCATTATATTATTTAAATATATTAAAATAACAATATAATTTTAAATTTTGTAATAACTTTACAAAACTATTAATG
TGTAATATTCATATTATATTTTATATACGTGTTAGTTATTAATTATTTTTAATATCAAATTTTAGTTATTTGTAAATTAT
ATATATTCCTATATGAACTCTAGACTCGTCTTTTAATATTTCTTTTTTTTTAATTTTGAATTTTCTGTAAATTGTATTTC
TATATAGACTCTATGCTCTTCTTCTAATATTATTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28164.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis