Browse Element(s) Details


OsAffx.28184.2.S1_at

Description tigr:9634.m04803
TID=OsAffx.28184.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4930011/11glycosyltransferase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49260NANA6+29849304..29854923Protein kinase domain containing protein
LOC_Os06g49270NANA6+29855654..29859637retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g49280NANA6+29868312..29868752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g49290NANA6+29870180..29870777transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g49300OsAffx.28184.2.S1_at11/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49300OsAffx.28184.1.S1_x_at4/116+29871568..29873426glycosyltransferase, putative
LOC_Os06g49310OsAffx.28185.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49310Os.28142.1.S1_at11/116+29876101..29884251MATE efflux family protein, expressed
LOC_Os06g49320Os.11586.1.S1_at11/116+29882510..29885305glycosyltransferase, putative, expressed
LOC_Os06g49330OsAffx.28186.2.S1_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49330OsAffx.28186.2.S1_x_at11/116+29888941..29889546hypothetical protein
LOC_Os06g49340Os.51658.1.S1_at11/116+29890032..29891909F-box domain containing protein, expressed
LOC_Os06g49350NANA6+29896282..29903445retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28184.2.S1_at--104--7731Chr06:29872135..29872159 (25 bp)
GGTGGACTTCAAGCGGTTCTTGATG
LOC_Os06g49300
OsAffx.28184.2.S1_at--805--3231Chr06:29872126..29872150 (25 bp)
CAAGCGGTTCTTGATGTGGCGGTAC
LOC_Os06g49300
OsAffx.28184.2.S1_at--666--4751Chr06:29872042..29872066 (25 bp)
GCTGCTGGTGATCAACCGGCGCTCC
LOC_Os06g49300
OsAffx.28184.2.S1_at--814--7891Chr06:29872010..29872034 (25 bp)
GGTTCGTGAACCTGGACGAGATCGT
LOC_Os06g49300
OsAffx.28184.2.S1_at--716--9171Chr06:29871773..29871797 (25 bp)
TGCCGCCGCGCGACATGAACATGAG
LOC_Os06g49300
OsAffx.28184.2.S1_at--102--4151Chr06:29871767..29871791 (25 bp)
CGCGCGACATGAACATGAGGTACCT
LOC_Os06g49300
OsAffx.28184.2.S1_at--158--1031Chr06:29871750..29871774 (25 bp)
AGGTACCTGCAGTACAACATCACGG
LOC_Os06g49300
OsAffx.28184.2.S1_at--109--1371Chr06:29871719..29871743 (25 bp)
AGAGCACGCTGTCGGAGGTGTACCC
LOC_Os06g49300
OsAffx.28184.2.S1_at--770--2211Chr06:29871656..29871680 (25 bp)
ACAAGCAGAGCTGGTCGCTCGTCAA
LOC_Os06g49300
OsAffx.28184.2.S1_at--39--1631Chr06:29871648..29871672 (25 bp)
AGCTGGTCGCTCGTCAAGGACATCT
LOC_Os06g49300
OsAffx.28184.2.S1_at--159--9431Chr06:29871620..29871644 (25 bp)
TCGGGCAGCAGGACGTCCGCCTCGA
LOC_Os06g49300
Target Sequence 
GGTGGACTTCAAGCGGTTCTTGATGTGGCGGTACGCGCTGCCGCGGGAGCACGCGATCCGGATGGAGGAGGAGGACAAGA
GCAAGAAGCCGCGGCTGCTGGTGATCAACCGGCGCTCCCGCCGCCGGTTCGTGAACCTGGACGAGATCGTGGCGGCGGCG
GAGGGGGTCGGGTTCGAGGTGGCGGCGGCGGAGCTGGACGCCCACATCCCGGCGGCGGCGTCGGCGGTGAACTCGTACGA
CGCGATGGTGGCGGTGCACGGGTCGGGGCTGACCAACCTGGTGTTCCTCCCCATGAACGCGGTGGTGATCCAGGTGGTGC
CGCTGGGGAGGATGGAGGGGCTCGCCATGGACGAGTACGGCGTGCCGCCGCGCGACATGAACATGAGGTACCTGCAGTAC
AACATCACGGCGGAGGAGAGCACGCTGTCGGAGGTGTACCCGCGGGCGCACCCGGTGTTCCTCGACCCGCTCCCCATCCA
CAAGCAGAGCTGGTCGCTCGTCAAGGACATCTACCTCGGGCAGCAGGACGTCCGCCTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28184.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis