Browse Element(s) Details


OsAffx.28200.1.S1_at

Description tigr:9634.m04931
TID=OsAffx.28200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5078010/11hypothetical protein
LOC_Os06g5063010/11expressed protein
LOC_Os06g504509/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50760NANA6+30705867..30706325transposon protein, putative, unclassified
LOC_Os06g50770OsAffx.16011.1.S1_at6/116+30717415..30718931hypothetical protein
LOC_Os06g50780OsAffx.28200.1.S1_at10/116+30724257..30731558hypothetical protein
LOC_Os06g50789OsAffx.16009.1.S1_at9/116+30735061..30737132hypothetical protein
LOC_Os06g50789OsAffx.16010.1.S1_at7/116+30735061..30737132hypothetical protein
LOC_Os06g50800NANA6+30739031..30742267transposon protein, putative, unclassified
LOC_Os06g50809NANA6+30747993..30748679hypothetical protein
LOC_Os06g50818Os.8311.1.S1_a_at3/116+30750239..30751666hypothetical protein
LOC_Os06g50830Os.55915.1.S1_at11/116+30753647..30757414bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28200.1.S1_at--415--5273Chr06:30545793..30545817 (25 bp)
GAATGCCCTGAACAACGTGATGACA
LOC_Os06g50450
OsAffx.28200.1.S1_at--755--813Chr06:30545850..30545874 (25 bp)
ATGGTTTACTTACGCCATGTTCGTC
LOC_Os06g50450
OsAffx.28200.1.S1_at--174--9413Chr06:30545870..30545894 (25 bp)
TCGTCATCATGGTTGGAAAGGCTCA
LOC_Os06g50450
OsAffx.28200.1.S1_at--1007--2193Chr06:30546066..30546090 (25 bp)
ACAACAATTCTTGCGGCTGTCTGAT
LOC_Os06g50450
OsAffx.28200.1.S1_at--889--8533Chr06:30546315..30546339 (25 bp)
TGGAGAACTATGAACTCCTTGAGTT
LOC_Os06g50450
OsAffx.28200.1.S1_at--104--10671NONE
TTGAGTTCCCTAAAAGTTACGGCAT
NONE
OsAffx.28200.1.S1_at--718--1253Chr06:30548347..30548371 (25 bp)
AGATTTTCCTGCTATAACTCCAACA
LOC_Os06g50450
OsAffx.28200.1.S1_at--529--9813Chr06:30548361..30548385 (25 bp)
TAACTCCAACAGGTCACGATGATGC
LOC_Os06g50450
OsAffx.28200.1.S1_at--146--1133Chr06:30548749..30548773 (25 bp)
AGTGCTCCACCGAGTGGTCATTATA
LOC_Os06g50450
OsAffx.28200.1.S1_at--800--7273Chr06:30548783..30548807 (25 bp)
GTCCACCAGATGTGCCAGGGCTTGA
LOC_Os06g50450
OsAffx.28200.1.S1_at--429--10552Chr06:30724290..30724715 (25 bp)
TTCTTGCTCTGCGAGGCGTCCAAAG
LOC_Os06g50780
Target Sequence 
GAATGCCCTGAACAACGTGATGACAATGAACCCTTTGAGAATTCAGTGGAAGATGGCATGGTTTACTTACGCCATGTTCG
TCATCATGGTTGGAAAGGCTCAAAAGACAATATGGGCAAACAACAATTCTTGCGGCTGTCTGATTTGGAACTGGTAAATT
CAAATTCCTTGGATGAAATTTTACCTGCAATGGTGGAATGTCTAATATTGCATAAAGATGATTACCACCACATGTATGAC
AAGGATATCTATGATAGAGTTTTGGGATGGATTGATGAAATATTGGAGAACTATGAACTCCTTGAGTTCCCTAAAAGTTA
CGGCATAGATTTTCCTGCTATAACTCCAACAGGTCACGATGATGCCTTCCCCGATCCTCACAGGAGTGCTCCACCGAGTG
GTCATTATAATCCAATTGGTCCACCAGATGTGCCAGGGCTTGAGCCTTCTTGCTCTGCGAGGCGTCCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis