Browse Element(s) Details


OsAffx.2822.1.S1_at

Description tigr:9630.m03018
TID=OsAffx.2822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3193011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g31899Os.35012.1.S1_at6/112+18837161..18837769NA
LOC_Os02g31910NANA2+18839683..18845973Potassium transporter 1, putative, expressed
LOC_Os02g31920Os.49414.1.S1_at11/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.47711.1.A1_s_at6/112+18853871..18856948hypothetical protein
LOC_Os02g31920OsAffx.2821.1.S1_at5/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31920Os.41918.1.S1_x_at2/112+18853871..18856948hypothetical protein
LOC_Os02g31930OsAffx.2822.1.S1_at11/112+18862451..18862808hypothetical protein
LOC_Os02g31940Os.49906.1.S1_at10/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31940Os.11262.2.S1_x_at1/112+18866419..18872631Potassium transporter 1, putative, expressed
LOC_Os02g31950OsAffx.12310.1.S1_at11/112+18876585..18876860hypothetical protein
LOC_Os02g31960Os.37797.1.A1_s_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed
LOC_Os02g31960Os.37797.1.A1_at11/112+18884061..18891149ATP/GTP binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2822.1.S1_at--753--2191Chr02:18862749..18862773 (25 bp)
ACACAACTCAAGTGCAGTACAACTC
LOC_Os02g31930
OsAffx.2822.1.S1_at--568--7331Chr02:18862738..18862762 (25 bp)
GTGCAGTACAACTCACTTTGATATT
LOC_Os02g31930
OsAffx.2822.1.S1_at--1106--3671Chr02:18862723..18862747 (25 bp)
CTTTGATATTTGGACTACTCTCTAG
LOC_Os02g31930
OsAffx.2822.1.S1_at--1146--8518Chr11:11065521..11065541 (21 bp)
TGGACTACTCTCTAGTAGAGTTAGA
NONE
OsAffx.2822.1.S1_at--561--10631Chr02:18862675..18862699 (25 bp)
TTGAGGGAAAGCTTCGAAACGAGTA
LOC_Os02g31930
OsAffx.2822.1.S1_at--724--1171Chr02:18862654..18862678 (25 bp)
AGTACCTTAAAGTTCAGAGTTCTCT
LOC_Os02g31930
OsAffx.2822.1.S1_at--944--6051Chr02:18862623..18862647 (25 bp)
GAGTTATGAAGGACTGCCGGAGTTA
LOC_Os02g31930
OsAffx.2822.1.S1_at--544--8111Chr02:18862613..18862637 (25 bp)
GGACTGCCGGAGTTATCGGCACTCT
LOC_Os02g31930
OsAffx.2822.1.S1_at--601--10431Chr02:18862601..18862625 (25 bp)
TTATCGGCACTCTCTCCATTGGAGT
LOC_Os02g31930
OsAffx.2822.1.S1_at--380--8211Chr02:18862596..18862620 (25 bp)
GGCACTCTCTCCATTGGAGTCTCGG
LOC_Os02g31930
OsAffx.2822.1.S1_at--834--1131Chr02:18862568..18862592 (25 bp)
AGTGCCGGAGTGTCAGCACTTTCTC
LOC_Os02g31930
Target Sequence 
ACACAACTCAAGTGCAGTACAACTCACTTTGATATTTGGACTACTCTCTAGTAGAGTTAGAATATGGGAAGATATTGAGG
GAAAGCTTCGAAACGAGTACCTTAAAGTTCAGAGTTCTCTCCAGGGGAGTTATGAAGGACTGCCGGAGTTATCGGCACTC
TCTCCATTGGAGTCTCGGAGGAGTGCCGGAGTGTCAGCACTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis