Browse Element(s) Details


OsAffx.28270.2.S1_at

Description tigr:9635.m00390
TID=OsAffx.28270.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0459011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04560OsAffx.16082.1.S1_at11/117+2021458..2023361No apical meristem protein
LOC_Os07g04570OsAffx.5210.1.S1_at10/117+2031013..2032041RNA recognition motif family protein
LOC_Os07g04580Os.57389.1.S1_at10/117+2033472..2035042Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os07g04590OsAffx.28270.2.S1_at11/117+2040785..2042485hypothetical protein
LOC_Os07g04600OsAffx.5211.1.S1_at11/117+2044857..2047490hypothetical protein
LOC_Os07g04610OsAffx.16083.1.S1_at11/117+2048397..2049157hypothetical protein
LOC_Os07g04620OsAffx.28265.1.S1_at11/117+2050708..2051394hypothetical protein
LOC_Os07g04630NANA7+2052778..2053215hypothetical protein
LOC_Os07g04650OsAffx.28267.1.S1_at11/117+2060481..2062147Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os07g04660OsAffx.16085.1.S1_at11/117+2063509..2064003ABC transporter family protein, putative
LOC_Os07g04670OsAffx.28268.1.S1_at11/117+2065644..2066474hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28270.2.S1_at--306--2811Chr07:2041436..2041460 (25 bp)
AAGATCGTGCTCTGCTGGCGATACA
LOC_Os07g04590
OsAffx.28270.2.S1_at--699--4811Chr07:2041428..2041452 (25 bp)
GCTCTGCTGGCGATACATGTATGGA
LOC_Os07g04590
OsAffx.28270.2.S1_at--249--8391Chr07:2041403..2041427 (25 bp)
GGCGACGACTACTGTGATTTGGGAT
LOC_Os07g04590
OsAffx.28270.2.S1_at--30--7991Chr07:2041382..2041406 (25 bp)
GGATGCGATTGCTTTGACGCTCACA
LOC_Os07g04590
OsAffx.28270.2.S1_at--1151--10751Chr07:2041369..2041393 (25 bp)
TTGACGCTCACAGTTACAATGATCT
LOC_Os07g04590
OsAffx.28270.2.S1_at--767--2311Chr07:2041338..2041362 (25 bp)
AAAGATCAGGACAGGCGTCGCCGCC
LOC_Os07g04590
OsAffx.28270.2.S1_at--152--3411Chr07:2041311..2041335 (25 bp)
CAGCAGAAGCTATTCGGTTCCTCAC
LOC_Os07g04590
OsAffx.28270.2.S1_at--316--10051Chr07:2041188..2041210 (23 bp)
TAGATCTCGACTTGTCCGACGTCAG
LOC_Os07g04590
OsAffx.28270.2.S1_at--704--4271Chr07:2041126..2041150 (25 bp)
CCTGCTTCCGACGAGTGGAACTTTG
LOC_Os07g04590
OsAffx.28270.2.S1_at--739--10271Chr07:2041105..2041129 (25 bp)
TTTGCAGTCGGGAACATGCAGCAGC
LOC_Os07g04590
OsAffx.28270.2.S1_at--154--5651Chr07:2040935..2040959 (25 bp)
GACACCAACTACTGGAGCCGATGAG
LOC_Os07g04590
Target Sequence 
AAGATCGTGCTCTGCTGGCGATACATGTATGGAGGCGACGACTACTGTGATTTGGGATGCGATTGCTTTGACGCTCACAG
TTACAATGATCTGCAATCAAAGATCAGGACAGGCGTCGCCGCCGCCAGCAGAAGCTATTCGGTTCCTCACCCTGACCTAG
ATCTCGACTTGTCCGACGTCAGCCAGTTCGCTGGCGTTTTCTCCTCGCAGCAACAACCCCCTGCTTCCGACGAGTGGAAC
TTTGCAGTCGGGAACATGCAGCAGCAGCAGCAGCAGCGTTCGATGACGCCCTCCGCCAGCAGCCGCGCCGCTGCCGCTAC
CGACGCGGACGGAGAGGATCCACCGCCGCCGCCGCCACACCCTCCATCTCCATCGGCAGAGGGGTCTGCGTCTCCTCCTA
CGACGCCGGGGACACCAACTACTGGAGCCGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28270.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis