Browse Element(s) Details


OsAffx.28323.1.S1_at

Description tigr:9635.m00682
TID=OsAffx.28323.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0736010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07310Os.23950.1.A1_at11/117+3643991..3655054polynucleotide phosphorylase, putative, expressed
LOC_Os07g07320Os.13016.1.S1_a_at11/117+3660674..3661707Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os07g07329NANA7+3662263..3662611NA
LOC_Os07g07340Os.52598.1.S1_at11/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07340OsAffx.25749.1.S1_s_at2/117+3667137..3670556Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os07g07350Os.51482.1.S1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07350Os.6805.1.A1_at11/117+3674265..3676709Zinc finger A20 and AN1 domains containing protein At2g36320, putative, expressed
LOC_Os07g07360OsAffx.28323.1.S1_at10/117+3679836..3682617hypothetical protein
LOC_Os07g07360OsAffx.3376.1.S1_at1/117+3679836..3682617hypothetical protein
LOC_Os07g07370NANA7+3683751..3683966A20-like zinc finger family protein
LOC_Os07g07380OsAffx.28324.1.S1_at11/117+3686657..3687025hypothetical protein
LOC_Os07g07390OsAffx.12670.1.S1_at1/117+3688467..3690622Calcium binding EGF domain containing protein
LOC_Os07g07400OsAffx.16134.1.S1_at11/117+3696970..3697428AN1-like Zinc finger family protein
LOC_Os07g07410Os.18299.1.S1_at11/117+3697927..3699859oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os07g07420OsAffx.28325.1.S1_x_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07420OsAffx.28325.1.S1_at11/117+3700646..3703223Gibberellin 20 oxidase 1, putative, expressed
LOC_Os07g07430OsAffx.5240.1.S1_at11/117+3705107..3706216CAF1 family ribonuclease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28323.1.S1_at--875--6111NONE
GAGTGAGAGGTGGTCTCCATGCTCT
NONE
OsAffx.28323.1.S1_at--67--631Chr07:3681906..3681930 (25 bp)
ATGCTCTGCTTGCTCATTGGTGGGA
LOC_Os07g07360
OsAffx.28323.1.S1_at--877--1451Chr07:3681931..3681953 (23 bp)
AGAAGATGCCATCCTACCAAGGTAT
LOC_Os07g07360
OsAffx.28323.1.S1_at--399--2371Chr07:3682332..3682356 (25 bp)
AAACCACGGAGCGAATGTACCCTGC
LOC_Os07g07360
OsAffx.28323.1.S1_at--849--8751Chr07:3682347..3682371 (25 bp)
TGTACCCTGCAATCATGCAAAGCTG
LOC_Os07g07360
OsAffx.28323.1.S1_at--809--5351Chr07:3682375..3682397 (23 bp)
GAAGATGCAGCAGTGTAATGGTACA
LOC_Os07g07360
OsAffx.28323.1.S1_at--954--7831Chr07:3682438..3682462 (25 bp)
GGTACAGTACATGGCCAGAGTGCAA
LOC_Os07g07360
OsAffx.28323.1.S1_at--203--8451Chr07:3682450..3682474 (25 bp)
GGCCAGAGTGCAAAACCGTCACGTG
LOC_Os07g07360
OsAffx.28323.1.S1_at--691--7551Chr07:3682475..3682499 (25 bp)
GGGCGTTCATGGCTTACCTAAGCAC
LOC_Os07g07360
OsAffx.28323.1.S1_at--463--9791Chr07:3682493..3682517 (25 bp)
TAAGCACGCTGACGCACTGCTGGTC
LOC_Os07g07360
OsAffx.28323.1.S1_at--1147--7251Chr07:3682520..3682544 (25 bp)
GTCCTCCTCATTTGGCTAACTTGTA
LOC_Os07g07360
Target Sequence 
GAGTGAGAGGTGGTCTCCATGCTCTGCTTGCTCATTGGTGGGAAGAAGATGCCATCCTACCAAGGTATACAGAAACCACG
GAGCGAATGTACCCTGCAATCATGCAAAGCTGCATGAAGATGCAGCAGTGTAATGGTACAGTACATGGCCAGAGTGCAAA
ACCGTCACGTGGGGCGTTCATGGCTTACCTAAGCACGCTGACGCACTGCTGGTCCGGTCCTCCTCATTTGGCTAACTTGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis