Browse Element(s) Details


OsAffx.28340.1.S1_x_at

Description tigr:9635.m00757
TID=OsAffx.28340.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0809011/11hypothetical protein
LOC_Os04g340301/11U-box domain containing protein
LOC_Os10g066701/11hypothetical protein
LOC_Os07g374101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08040OsAffx.28338.1.S1_x_at11/117+4069114..4074442expressed protein
LOC_Os07g08040OsAffx.6178.1.S1_at1/117+4069114..4074442expressed protein
LOC_Os07g08050Os.52022.1.S1_at11/117+4075804..4083822expressed protein
LOC_Os07g08050Os.52983.1.S1_x_at11/117+4075804..4083822expressed protein
LOC_Os07g08060Os.53121.1.S1_at11/117+4085754..4087271Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.13517.1.S1_at11/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08070Os.26963.1.A1_at1/117+4087527..4090386Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os07g08080OsAffx.28340.4.S1_at11/117+4091235..4092423expressed protein
LOC_Os07g08090OsAffx.28340.1.S1_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.1.S1_x_at11/117+4099166..4102756hypothetical protein
LOC_Os07g08090OsAffx.28340.4.S1_at1/117+4099166..4102756hypothetical protein
LOC_Os07g08100OsAffx.5250.1.S1_at11/117+4104836..4105876hypothetical protein
LOC_Os07g08120Os.15264.1.S1_at11/117+4116736..4121887ETO1-like protein 1, putative, expressed
LOC_Os07g08129NANA7+4123125..4123649NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28340.1.S1_x_at--162--9734Chr10:3443701..3443725 (25 bp)
TCAAGGTGGCGCTCCACGTGCTCTG
LOC_Os10g06670
OsAffx.28340.1.S1_x_at--195--10271Chr07:4099710..4099734 (25 bp)
TTTGCCCTTGGAGCCGAAACCGCGT
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--142--4071Chr07:4099696..4099720 (25 bp)
CGAAACCGCGTCAAGGCGGTCGACG
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--103--7131Chr07:4099594..4099618 (25 bp)
GTCATGGCTATCGACCACATCTGCG
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--1012--511Chr07:4099585..4099609 (25 bp)
ATCGACCACATCTGCGGTTGCGCGG
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--856--8231Chr07:4099557..4099581 (25 bp)
GGCACTTGGCACTGGTGGCGCACCC
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--382--3351Chr07:4099456..4099480 (25 bp)
CACGTCGTGGCGACGCACACGGCGA
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--704--9571Chr07:4099380..4099404 (25 bp)
TCTTCCTGGTGCAAGTCGGCGCCTC
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--388--5851Chr07:4099331..4099355 (25 bp)
GACCACGAGACGGTCCAGGAGCTGC
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--766--3991Chr07:4099268..4099292 (25 bp)
CGTGGGTGCCCTAGCGCTGGTATCC
LOC_Os07g08090
OsAffx.28340.1.S1_x_at--640--553Chr07:4099247..4099271 (25 bp)
ATCCCCATGCCCTGCGAGTGTGAGA
LOC_Os07g08090
Target Sequence 
TCAAGGTGGCGCTCCACGTGCTCTGCCGGCTTTGCCCTTGGAGCCGAAACCGCGTCAAGGCGGTCGACGTCGGCGCCGTG
TCGGCGCTCGTGCACCTCCTCCTCAACGAGGGCTGCGGCGGCGACAGGCGCGCCTGCGAGCTCGCCGTCATGGCTATCGA
CCACATCTGCGGTTGCGCGGAGGGGCACTTGGCACTGGTGGCGCACCCGACGGGGCTCGCGGCGGTGGCGTGCGCGGCGA
CGCGGCTGTCCACCGCGGGCACCGAGAGCGCTATGCGCGCGCTGCACGTCGTGGCGACGCACACGGCGACGTCGGCGGTG
CTGCAGGAGATGCTGGCCGTCGGCGTGGGGGCGAGGCTGTTCTTCCTGGTGCAAGTCGGCGCCTCCGGCAAGCGGACGAG
GGCGAGGTGGACCACGAGACGGTCCAGGAGCTGCCGTCGCCGGCCGCACCATCCTTCGGCCGCGCGCGCCGCCGTGGGTG
CCCTAGCGCTGGTATCCCCATGCCCTGCGAGTGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28340.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis