Browse Element(s) Details


OsAffx.28340.3.S1_x_at

Description tigr:9635.m03709
TID=OsAffx.28340.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3741011/11hypothetical protein
LOC_Os10g066701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37370OsAffx.28798.2.S1_s_at11/117+22388990..22390874hypothetical protein
LOC_Os07g37370OsAffx.28798.1.S1_at8/117+22388990..22390874hypothetical protein
LOC_Os07g37380NANA7+22402345..22403543expressed protein
LOC_Os07g37390OsAffx.5560.1.S1_at9/117+22408440..22409259hypothetical protein
LOC_Os07g37400Os.8724.1.S1_at11/117+22409532..22411377F-box domain containing protein, expressed
LOC_Os07g37410OsAffx.28340.3.S1_x_at11/117+22413096..22413977hypothetical protein
LOC_Os07g37410OsAffx.28340.1.S1_x_at1/117+22413096..22413977hypothetical protein
LOC_Os07g37420OsAffx.5561.1.S1_s_at11/117+22414480..22415518Short-chain type dehydrogenase/reductase, putative, expressed
LOC_Os07g37430OsAffx.28800.1.S1_x_at8/117+22416251..22417102hypothetical protein
LOC_Os07g37440OsAffx.16597.1.S1_at11/117+22417314..22418394hypothetical protein
LOC_Os07g37454OsAffx.28801.1.S1_s_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S2_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37454Os.55618.1.S1_at11/117+22425967..22427944Organic cation transporter 3, putative, expressed
LOC_Os07g37470Os.47463.1.S1_x_at3/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g37470Os.14491.2.S1_x_at2/117+22433886..22439389transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28340.3.S1_x_at--253--531Chr07:22413528..22413552 (25 bp)
ATCGACGGTGCGTCCATGGCGCGCC
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--626--8371Chr07:22413554..22413578 (25 bp)
GGCGCTGAAATTGGCGCTCCCAGCT
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--341--3851Chr07:22413558..22413582 (25 bp)
CTGAAATTGGCGCTCCCAGCTATGC
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--721--8951Chr07:22413559..22413583 (25 bp)
TGAAATTGGCGCTCCCAGCTATGCC
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--185--5611Chr07:22413560..22413584 (25 bp)
GAAATTGGCGCTCCCAGCTATGCCC
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--318--9952Chr10:3443622..3443642 (21 bp)
TACGCGGCTGACATCGGCGAGCGCC
LOC_Os10g06670
OsAffx.28340.3.S1_x_at--840--1831Chr07:22413588..22413612 (25 bp)
ACGCGGCTGACATCGGCGAGCGCCA
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--885--1771Chr07:22413694..22413718 (25 bp)
ACCGGCTCTGCCCTTGGAGCCAGAA
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--701--3611Chr07:22413706..22413730 (25 bp)
CTTGGAGCCAGAACCGCGTCAAGGC
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--1039--7551Chr07:22413851..22413875 (25 bp)
GGGCGCATGGTGCTGGTGGCACACC
LOC_Os07g37410
OsAffx.28340.3.S1_x_at--1112--3491Chr07:22413856..22413880 (25 bp)
CATGGTGCTGGTGGCACACCCGACG
LOC_Os07g37410
Target Sequence 
ATCGACGGTGCGTCCATGGCGCGCCCGGCGCTGAAATTGGCGCTCCCAGCTATGCCCCCTACGCGGCTGACATCGGCGAG
CGCCACCGCGCTTGTCGACGGCGTGGTGGGGGTGGTGGCGGACAGGCCGTCGGCGAAGGCGGTCAAGGTGGCGCTCCACG
TGCTCTACCGGCTCTGCCCTTGGAGCCAGAACCGCGTCAAGGCGGTCGATGCCGGCGCCGTGTCGGCGCTCGTGCGTCTC
CTCCTCAACGAGGGCTGCGGCGGCGACAGGCGCGCCTGCGAGCTCGCCGTCGTGGCGACGACCACATCTGCAGCTACGCG
GAGGGGCGCATGGTGCTGGTGGCACACCCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28340.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis