Browse Element(s) Details


OsAffx.28373.1.S1_at

Description tigr:9635.m00964
TID=OsAffx.28373.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09970Os.9151.1.S1_at10/117+5312128..5316409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g09970OsAffx.16185.1.S1_at8/117+5312128..5316409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g09980NANA7+5321425..5321814hypothetical protein
LOC_Os07g09990OsAffx.17842.1.S1_at4/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_at2/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g09990OsAffx.31892.2.S1_x_at1/117+5326494..5331360retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g10000OsAffx.28373.1.S1_at11/117+5338209..5339504hypothetical protein
LOC_Os07g10010NANA7+5340865..5343418hypothetical protein
LOC_Os07g10020OsAffx.16186.1.S1_at11/117+5345130..5346712hypothetical protein
LOC_Os07g10030OsAffx.28375.1.S1_at11/117+5347789..5351839hypothetical protein
LOC_Os07g10030OsAffx.28375.1.S1_s_at1/117+5347789..5351839hypothetical protein
LOC_Os07g10040OsAffx.16187.1.S1_at10/117+5352874..5354055retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28373.1.S1_at--388--1331Chr07:5339330..5339352 (23 bp)
AGAGGATGTTACACGCTGATGGTGA
LOC_Os07g10000
OsAffx.28373.1.S1_at--143--6291Chr07:5339332..5339356 (25 bp)
GATGTTACACGCTGATGGTGACTGC
LOC_Os07g10000
OsAffx.28373.1.S1_at--553--731Chr07:5339333..5339357 (25 bp)
ATGTTACACGCTGATGGTGACTGCT
LOC_Os07g10000
OsAffx.28373.1.S1_at--510--6991Chr07:5339360..5339384 (25 bp)
GTACGAGTATTCCTCTACGCGTGTA
LOC_Os07g10000
OsAffx.28373.1.S1_at--1066--9932Chr07:5339361..5339385 (25 bp)
TACGAGTATTCCTCTACGCGTGTAT
LOC_Os07g10000
OsAffx.28373.1.S1_at--1114--1853Chr07:5339362..5339386 (25 bp)
ACGAGTATTCCTCTACGCGTGTATA
LOC_Os07g10000
OsAffx.28373.1.S1_at--456--4073Chr07:5339363..5339387 (25 bp)
CGAGTATTCCTCTACGCGTGTATAT
LOC_Os07g10000
OsAffx.28373.1.S1_at--400--91Chr07:5339368..5339392 (25 bp)
ATTCCTCTACGCGTGTATATAGTCC
LOC_Os07g10000
OsAffx.28373.1.S1_at--296--10674Chr11:10815482..10815821 (25 bp)
TTCCTCTACGCGTGTATATAGTCCT
NONE
OsAffx.28373.1.S1_at--1101--10191Chr07:5339425..5339449 (25 bp)
TATTTAACCTCGGTTGTATGGCCAT
LOC_Os07g10000
OsAffx.28373.1.S1_at--247--171Chr07:5339426..5339450 (25 bp)
ATTTAACCTCGGTTGTATGGCCATG
LOC_Os07g10000
Target Sequence 
AGAGGATGTTACACGCTGATGGTGACTGCTCAGTACGAGTATTCCTCTACGCGTGTATATAGTCCTAATTTAATTTCTTG
GGGAGGGTATTCCTCCGTATTTAACCTCGGTTGTATGGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28373.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis