Browse Element(s) Details


OsAffx.28376.1.S1_at

Description tigr:9635.m00973
TID=OsAffx.28376.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1009011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10070Os.50232.2.S1_x_at6/117+5379836..5381007hypothetical protein
LOC_Os07g10070Os.50232.1.S1_x_at6/117+5379836..5381007hypothetical protein
LOC_Os07g10080OsAffx.20877.1.S1_at1/117+5389861..5397679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g10080Os.45173.1.S1_x_at1/117+5389861..5397679retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g10090OsAffx.28376.1.S1_at11/117+5404153..5407056hypothetical protein
LOC_Os07g10100NANA7+5409201..5411279retrotransposon protein, putative, unclassified
LOC_Os07g10110Os.20645.1.S1_at10/117+5417068..5424872expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_s_at11/117+5429853..5434447expressed protein
LOC_Os07g10120OsAffx.28375.1.S1_at11/117+5429853..5434447expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28376.1.S1_at--968--2191Chr07:5405367..5405391 (25 bp)
ACAAAGCTCTTTGGAACGCTTCCAT
LOC_Os07g10090
OsAffx.28376.1.S1_at--935--2591Chr07:5405353..5405377 (25 bp)
AACGCTTCCATATTGCCCTTAAGAA
LOC_Os07g10090
OsAffx.28376.1.S1_at--613--591Chr07:5404827..5405282 (25 bp)
ATGCCTAACCAGCAAGGTCAGCTTT
LOC_Os07g10090
OsAffx.28376.1.S1_at--889--611Chr07:5404687..5404711 (25 bp)
ATGCTGGGCGCAAGGTTCTGGACAA
LOC_Os07g10090
OsAffx.28376.1.S1_at--440--1431Chr07:5404418..5404442 (25 bp)
AGAACCGCCAGGTTGCCATTGGAAT
LOC_Os07g10090
OsAffx.28376.1.S1_at--987--1611Chr07:5404324..5404348 (25 bp)
AGCTGGTCCTCAAGATTTGCCAGAG
LOC_Os07g10090
OsAffx.28376.1.S1_at--786--1311Chr07:5404303..5404327 (25 bp)
AGAGGCTGGCGATGTTCTTCCTCAG
LOC_Os07g10090
OsAffx.28376.1.S1_at--213--9611Chr07:5404258..5404282 (25 bp)
TCATCTGCAAGATGCTCCTGACTTG
LOC_Os07g10090
OsAffx.28376.1.S1_at--469--8271Chr07:5404228..5404252 (25 bp)
GGCAGGCAATCCACTTCAACCAGAG
LOC_Os07g10090
OsAffx.28376.1.S1_at--9--5871Chr07:5404206..5404230 (25 bp)
GAGCCCCATCTTCTTCAAGTGCAAG
LOC_Os07g10090
OsAffx.28376.1.S1_at--936--1111Chr07:5404189..5404213 (25 bp)
AGTGCAAGCTCCTCTTGAGAACCCT
LOC_Os07g10090
Target Sequence 
ACAAAGCTCTTTGGAACGCTTCCATATTGCCCTTAAGAAGGAGGGGAAAAAGAAGAAACCAGTAACAGATGAATTTGAGA
AGAACAAACGCATCAAAATTGGTGGCACAATGCCTAACCAGCAAGGTCAGCTTTCATTAATCAATCATATTGATTCTTCA
GACATTGATAAACAGATTGATGCTGGGCGCAAGGTTCTGGACAAATTCAGGTCGTGCGAAAATGAGATGTGCAAAAGTGC
CTTAGAAGAAATGGAACAAGTTCTTAACAATATCTCTCGATCAGCGAGACAGCAAACTCACGAGAACCGCCAGGTTGCCA
TTGGAATGCCACCGCTCGCTCCTGTGCTGCCAAGCGATGCTGCTGCTGGGCATCCTCAACTGCCAGCTGCAGCTGCAGCT
GGTCCTCAAGATTTGCCAGAGGCTGGCGATGTTCTTCCTCAGCCTCATCAGCCAGAGCCCCATCATCTGCAAGATGCTCC
TGACTTGCCAGCGGCAGGCAATCCACTTCAACCAGAGCCCCATCTTCTTCAAGTGCAAGCTCCTCTTGAGAACCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28376.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis