Browse Element(s) Details


OsAffx.28398.1.S1_at

Description tigr:9635.m01065
TID=OsAffx.28398.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1094011/11Exo70 exocyst complex subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10900Os.2987.3.S1_x_at2/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8980.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10900OsAffx.8272.1.S1_at1/117+5958991..5961675retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g10910Os.10286.2.A1_at11/117+5970401..5975221Exo70 exocyst complex subunit family protein, expressed
LOC_Os07g10910Os.10286.1.S1_x_at11/117+5970401..5975221Exo70 exocyst complex subunit family protein, expressed
LOC_Os07g10920Os.38820.1.S1_at11/117+5971908..5977368expressed protein
LOC_Os07g10920Os.53060.1.S1_at11/117+5971908..5977368expressed protein
LOC_Os07g10930NANA7+5984759..5985181hypothetical protein
LOC_Os07g10940OsAffx.28398.1.S1_at11/117+5986157..5995495Exo70 exocyst complex subunit family protein
LOC_Os07g10940Os.54910.1.S1_at1/117+5986157..5995495Exo70 exocyst complex subunit family protein
LOC_Os07g10950OsAffx.617.1.A1_at11/117+5998924..6002836hypothetical protein
LOC_Os07g10950OsAffx.617.1.A1_x_at11/117+5998924..6002836hypothetical protein
LOC_Os07g10950OsAffx.27854.1.S1_at1/117+5998924..6002836hypothetical protein
LOC_Os07g10960OsAffx.5289.1.S1_at11/117+6013523..6015699expressed protein
LOC_Os07g10970OsAffx.5290.1.S1_at11/117+6017150..6019452expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28398.1.S1_at--3--1871Chr07:5994900..5994924 (25 bp)
ACGACGGTAGCCAGAGCCAGATGAT
LOC_Os07g10940
OsAffx.28398.1.S1_at--1096--1371Chr07:5994912..5994936 (25 bp)
AGAGCCAGATGATGTCACCGCTCGG
LOC_Os07g10940
OsAffx.28398.1.S1_at--894--891Chr07:5995113..5995137 (25 bp)
AGGCGTACCGCCATGGGATCGAGCA
LOC_Os07g10940
OsAffx.28398.1.S1_at--239--7031Chr07:5995150..5995174 (25 bp)
GTACATACAAACATGGGCCGCCGTG
LOC_Os07g10940
OsAffx.28398.1.S1_at--1099--9871Chr07:5995177..5995201 (25 bp)
TACTTCCTGTCTACCACGAGATGAT
LOC_Os07g10940
OsAffx.28398.1.S1_at--1051--4791Chr07:5995257..5995281 (25 bp)
GCTCGCCGCCGTTGAGAGAATTCGC
LOC_Os07g10940
OsAffx.28398.1.S1_at--514--971Chr07:5995293..5995317 (25 bp)
AGGAGACCAGCGTTGAGCAGATGCA
LOC_Os07g10940
OsAffx.28398.1.S1_at--58--1871Chr07:5995347..5995371 (25 bp)
ACGAGCTGCGAAGAGCCGTCAAGGA
LOC_Os07g10940
OsAffx.28398.1.S1_at--541--871Chr07:5995383..5995407 (25 bp)
AGGCCTACTCCGAGTTCATGGACAA
LOC_Os07g10940
OsAffx.28398.1.S1_at--1047--3711Chr07:5995413..5995437 (25 bp)
CTACCTCCAATGCTGGCGAGGAGTT
LOC_Os07g10940
OsAffx.28398.1.S1_at--149--6071Chr07:5995433..5995457 (25 bp)
GAGTTCGCTACCGTCGATGATTTGA
LOC_Os07g10940
Target Sequence 
ACGACGGTAGCCAGAGCCAGATGATGTCACCGCTCGGCCGCCTCGTCGCCGGCGTGATCGGCAGCCTCGGCGTGATGCTC
CGGAGAACGGCGGAGCTGTACGAAACAGAAGGAGGTGAAGGTCTCCGGCACCTCTTCCTGCTGAACAACGAGCACGCCAT
CCTCCAAGCCATCGAGACGACGACGCTGCTACCCCTAGCAGCCGAGTGGACGCAGGCGTACCGCCATGGGATCGAGCAGC
ACAAGCAGGGGTACATACAAACATGGGCCGCCGTGGCTACTTCCTGTCTACCACGAGATGATCCTCCTCCTCCTCCGACG
TCGGCGAAGAAAGCCGGCTTCCTACGCCGCCGCCGTCGCTCGCCGCCGTTGAGAGAATTCGCGGCGTCTCTGGAGGAGAC
CAGCGTTGAGCAGATGCAGTGGAAGGCGGCCAGTCCGCATCTCCGCGACGAGCTGCGAAGAGCCGTCAAGGAGTGCGTCG
CGCAGGCCTACTCCGAGTTCATGGACAAGCATCCTACCTCCAATGCTGGCGAGGAGTTCGCTACCGTCGATGATTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28398.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis