Browse Element(s) Details


OsAffx.28402.1.S1_at

Description tigr:9635.m01130
TID=OsAffx.28402.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1156010/11hypothetical protein
LOC_Os02g162901/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11520OsAffx.25936.1.S1_s_at11/117+6343476..6346482transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11520OsAffx.25936.7.S1_s_at11/117+6343476..6346482transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11520OsAffx.25936.2.S1_x_at5/117+6343476..6346482transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11520OsAffx.25936.5.S1_x_at2/117+6343476..6346482transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11530NANA7+6347576..6348028hypothetical protein
LOC_Os07g11540Os.10827.1.S1_x_at11/117+6348777..6351611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11540Os.46055.2.S1_x_at6/117+6348777..6351611transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g11550NANA7+6356773..6357589hypothetical protein
LOC_Os07g11560OsAffx.28402.1.S1_at10/117+6370971..6373049hypothetical protein
LOC_Os07g11570Os.53142.1.S1_at3/117+6383863..6384636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11570Os.23706.1.A1_x_at1/117+6383863..6384636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11580NANA7+6386431..6387060retrotransposon protein, putative, unclassified
LOC_Os07g11590OsAffx.22848.4.S1_at2/117+6389103..6393821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11590OsAffx.22848.4.S1_x_at1/117+6389103..6393821retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28402.1.S1_at--925--4891Chr07:6372645..6372669 (25 bp)
GCTTCTTCATCTCAACCCAGCGAGT
LOC_Os07g11560
OsAffx.28402.1.S1_at--481--10551Chr07:6372640..6372664 (25 bp)
TTCATCTCAACCCAGCGAGTTCGAT
LOC_Os07g11560
OsAffx.28402.1.S1_at--2--9711Chr07:6372634..6372658 (25 bp)
TCAACCCAGCGAGTTCGATTCGTGG
LOC_Os07g11560
OsAffx.28402.1.S1_at--561--1231Chr07:6372623..6372647 (25 bp)
AGTTCGATTCGTGGCGGAGCTCTGG
LOC_Os07g11560
OsAffx.28402.1.S1_at--47--4491Chr07:6372588..6372612 (25 bp)
GCCGTGGGCGCTGTCGGTGTGCGTC
LOC_Os07g11560
OsAffx.28402.1.S1_at--96--7134Chr11:13513303..13513747 (25 bp)
GTCATCGCCGGTGGAGGTAGAGGAG
NONE
OsAffx.28402.1.S1_at--833--2891NONE
AAGGAGGGAGCCACTATGTGCATGA
NONE
OsAffx.28402.1.S1_at--780--4391Chr07:6371072..6371096 (25 bp)
GCCACTATGTGCATGATGGGAGTCC
LOC_Os07g11560
OsAffx.28402.1.S1_at--489--6251Chr07:6371058..6371082 (25 bp)
GATGGGAGTCCAAAGCTACTACCAA
LOC_Os07g11560
OsAffx.28402.1.S1_at--452--6091Chr07:6371053..6371077 (25 bp)
GAGTCCAAAGCTACTACCAAACTGA
LOC_Os07g11560
OsAffx.28402.1.S1_at--1087--5132Chr03:22363394..22363500 (25 bp)
GCAACAATTAGACATGACAATGCTT
NONE
Target Sequence 
GCTTCTTCATCTCAACCCAGCGAGTTCGATTCGTGGCGGAGCTCTGGCGAGGCCGCCGCCGTGGGCGCTGTCGGTGTGCG
TCGCCTCCCCCTGCGCCGAGTTGGCCGCCCATCCCAGCGCCGAGCTCGTTGCTCGTGGCCGTGGGTGGGGTGAGGACGTC
ATCGCCGGTGGAGGTAGAGGAGGCAAGGAGGGAGCCACTATGTGCATGATGGGAGTCCAAAGCTACTACCAAACTGATGC
AACAATTAGACATGACAATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis