Browse Element(s) Details


OsAffx.28458.1.S1_at

Description gb:NM_186903.1
DB_XREF= gi:34900891
TID=OsAffx.28458.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH (OJ1057_E05.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1538011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15350OsAffx.11949.1.S1_at11/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.47463.1.S1_x_at4/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.14491.2.S1_x_at3/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350Os.27037.1.A1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15350OsAffx.15868.1.S1_at1/117+8844682..8857280transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15360OsAffx.28457.1.S1_at11/117+8859988..8862602hypothetical protein
LOC_Os07g15360OsAffx.10096.1.S1_x_at2/117+8859988..8862602hypothetical protein
LOC_Os07g15370Os.9420.1.S1_at11/117+8869889..8877210Metal transporter Nramp1, putative, expressed
LOC_Os07g15380OsAffx.28458.1.S1_at11/117+8881477..8881935NA
LOC_Os07g15390OsAffx.16281.1.S1_at11/117+8891577..8892202hypothetical protein
LOC_Os07g15400OsAffx.10162.1.S1_at6/117+8896618..8897117hypothetical protein
LOC_Os07g15410OsAffx.30486.1.S1_at1/117+8903861..8910559hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28458.1.S1_at--211--2331Chr07:8881510..8881534 (25 bp)
AAAGTTGAGAGCGAATCCTCACCAA
LOC_Os07g15380
OsAffx.28458.1.S1_at--139--6011Chr07:8881516..8881540 (25 bp)
GAGAGCGAATCCTCACCAAGGCAAT
LOC_Os07g15380
OsAffx.28458.1.S1_at--949--5871Chr07:8881518..8881542 (25 bp)
GAGCGAATCCTCACCAAGGCAATGT
LOC_Os07g15380
OsAffx.28458.1.S1_at--1021--5251Chr07:8881522..8881546 (25 bp)
GAATCCTCACCAAGGCAATGTGGTA
LOC_Os07g15380
OsAffx.28458.1.S1_at--289--3211Chr07:8881532..8881556 (25 bp)
CAAGGCAATGTGGTACTACTGGCAC
LOC_Os07g15380
OsAffx.28458.1.S1_at--330--8231Chr07:8881535..8881559 (25 bp)
GGCAATGTGGTACTACTGGCACAAT
LOC_Os07g15380
OsAffx.28458.1.S1_at--947--7831Chr07:8881543..8881567 (25 bp)
GGTACTACTGGCACAATGGAGCAGC
LOC_Os07g15380
OsAffx.28458.1.S1_at--58--3731Chr07:8881547..8881571 (25 bp)
CTACTGGCACAATGGAGCAGCGAGA
LOC_Os07g15380
OsAffx.28458.1.S1_at--316--1511Chr07:8881562..8881586 (25 bp)
AGCAGCGAGAGAAGCCTAGTGTTGT
LOC_Os07g15380
OsAffx.28458.1.S1_at--1133--2651Chr07:8881573..8881597 (25 bp)
AAGCCTAGTGTTGTAGGAGATGCAC
LOC_Os07g15380
OsAffx.28458.1.S1_at--1072--10051Chr07:8881578..8881602 (25 bp)
TAGTGTTGTAGGAGATGCACAAGCC
LOC_Os07g15380
Target Sequence 
AAAGTTGAGAGCGAATCCTCACCAAGGCAATGTGGTACTACTGGCACAATGGAGCAGCGAGAGAAGCCTAGTGTTGTAGG
AGATGCACAAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis