Browse Element(s) Details


OsAffx.28461.1.S1_at

Description tigr:9635.m01543
TID=OsAffx.28461.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1550011/11OB-fold nucleic acid binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15460Os.409.1.S1_at11/117+8964330..8969177Metal transporter Nramp1, putative, expressed
LOC_Os07g15470NANA7+8972971..8978663retrotransposon protein, putative, unclassified
LOC_Os07g15480NANA7+8979594..8981217hypothetical protein
LOC_Os07g15490Os.18530.1.S1_at11/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15490OsAffx.24019.1.S1_x_at1/117+8987441..8991142BTB/POZ domain containing protein, expressed
LOC_Os07g15500OsAffx.28461.1.S1_at11/117+8992346..8995512OB-fold nucleic acid binding domain containing protein, expressed
LOC_Os07g15510Os.34643.1.S1_at1/117+8996899..8999625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15520NANA7+9000605..9001033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15530Os.10688.1.S1_at2/117+9002297..9002524expressed protein
LOC_Os07g15540Os.29967.1.S1_at11/117+9003509..9006804GAF domain containing protein, expressed
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28461.1.S1_at--1010--8131Chr07:8993030..8993054 (25 bp)
GGACAATGGCAGTACTCAAGGTGTA
LOC_Os07g15500
OsAffx.28461.1.S1_at--258--5531Chr07:8992699..8992723 (25 bp)
GAAAAGCTGAGTCGACCTCTTGAAG
LOC_Os07g15500
OsAffx.28461.1.S1_at--389--7331Chr07:8992674..8992698 (25 bp)
GTGAACGGGTGCACCCTAATAGCAA
LOC_Os07g15500
OsAffx.28461.1.S1_at--537--7711Chr07:8992640..8992664 (25 bp)
GGGTGATGCGGTATTGCCAGATAAT
LOC_Os07g15500
OsAffx.28461.1.S1_at--41--3611Chr07:8992565..8992589 (25 bp)
CATTGGTCTGGATGATGTCGCACAT
LOC_Os07g15500
OsAffx.28461.1.S1_at--353--771Chr07:8992551..8992575 (25 bp)
ATGTCGCACATCTTGTTGAGCACGC
LOC_Os07g15500
OsAffx.28461.1.S1_at--71--3591Chr07:8992487..8992511 (25 bp)
CATTACTGGAACTTTGGGCATTGTC
LOC_Os07g15500
OsAffx.28461.1.S1_at--1014--4931Chr07:8992470..8992494 (25 bp)
GCATTGTCCTGCCAACTCAAGAAAA
LOC_Os07g15500
OsAffx.28461.1.S1_at--643--2491Chr07:8992432..8992456 (25 bp)
AACAGTGATGCAACTACTCTCAGTG
LOC_Os07g15500
OsAffx.28461.1.S1_at--284--9051Chr07:8992409..8992433 (25 bp)
TGCATCGTTGCATTCACAGCCAAAT
LOC_Os07g15500
OsAffx.28461.1.S1_at--932--6231Chr07:8992382..8992406 (25 bp)
GATGGCTTCTGTAACTGAATGGACA
LOC_Os07g15500
Target Sequence 
GGACAATGGCAGTACTCAAGGTGTAGGAAATCACCTAGATACAAGGATGAAGGAAAAAGATATAAATCCTTCAAACAAGA
ATACACCAAGCTACAGTGCCGATCAGCAATTCCAAAAAACTAGTTCCAGTTCANNNAGTTCTGATGAAAAGCTGAGTCGA
CCTCTTGAAGGTGAACGGGTGCACCCTAATAGCAAAAAGCAAAGGGGTGATGCGGTATTGCCAGATAATGTTATGTCAAG
TACGAATATTGAGACCTATGGGTTAGCCAATAATCTAAACATTGGTCTGGATGATGTCGCACATCTTGTTGAGCACGCTT
CAATCAAAAAACCCAATGAGCATCAGCAAAAGGACTTCATTACTGGAACTTTGGGCATTGTCCTGCCAACTCAAGAAAAT
AGCTCTGTAAGTAACAGTGATGCAACTACTCTCAGTGCATCGTTGCATTCACAGCCAAATAAGATGGCTTCTGTAACTGA
ATGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28461.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis