Browse Element(s) Details


OsAffx.28467.1.S1_at

Description tigr:9635.m01571
TID=OsAffx.28467.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1577011/11CCT motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15710Os.27435.1.S1_x_at3/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.51856.1.S2_x_at2/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710Os.46334.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.22896.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15710OsAffx.940.1.S1_x_at1/117+9125935..9130100transposon protein, putative, unclassified
LOC_Os07g15720NANA7+9135235..9135654hypothetical protein
LOC_Os07g15730OsAffx.28465.1.S1_at11/117+9135942..9136301hypothetical protein
LOC_Os07g15730OsAffx.16451.1.S1_x_at1/117+9135942..9136301hypothetical protein
LOC_Os07g15740OsAffx.22699.1.S1_x_at1/117+9136573..9140791retrotransposon protein, putative, unclassified
LOC_Os07g15750NANA7+9141074..9142072retrotransposon protein, putative, unclassified
LOC_Os07g15760OsAffx.3761.1.S1_x_at1/117+9142468..9145663hypothetical protein
LOC_Os07g15770OsAffx.28467.1.S1_at11/117+9150707..9153490CCT motif family protein
LOC_Os07g15770Os.56275.1.S1_x_at1/117+9150707..9153490CCT motif family protein
LOC_Os07g15780OsAffx.19542.3.S1_x_at5/117+9159146..9162873retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15790NANA7+9165791..9168833transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15800Os.14491.2.S1_x_at4/117+9170455..9175486transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g15800Os.47463.1.S1_x_at3/117+9170455..9175486transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0009909biological_processregulation of flower development
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28467.1.S1_at--1091--4151Chr07:9152800..9152824 (25 bp)
CGCCGTCGCTGTTCAGGAGGAACAC
LOC_Os07g15770
OsAffx.28467.1.S1_at--595--3511Chr07:9151013..9151036 (24 bp)
CATGTCATATTGTGGGAGCACGTTC
LOC_Os07g15770
OsAffx.28467.1.S1_at--842--6751Chr07:9150992..9151016 (25 bp)
GTTCACTGACGCAGCGAGCTCGATG
LOC_Os07g15770
OsAffx.28467.1.S1_at--394--1651Chr07:9150980..9151004 (25 bp)
AGCGAGCTCGATGCCCAAGGAGATG
LOC_Os07g15770
OsAffx.28467.1.S1_at--546--8011Chr07:9150932..9150956 (25 bp)
GGAGAGCTTGAACCCAAACACGGTG
LOC_Os07g15770
OsAffx.28467.1.S1_at--108--3291Chr07:9150918..9150942 (25 bp)
CAAACACGGTGGTTGGCGCAATGGT
LOC_Os07g15770
OsAffx.28467.1.S1_at--255--6991Chr07:9150824..9150848 (25 bp)
GTACGCGTCCAGAAAAGCCTATGCC
LOC_Os07g15770
OsAffx.28467.1.S1_at--458--10131Chr07:9150805..9150829 (25 bp)
TATGCCGAGATGAGGCCCCGAGTGA
LOC_Os07g15770
OsAffx.28467.1.S1_at--825--1091Chr07:9150785..9150809 (25 bp)
AGTGAGAGGTCGCTTCGCCAAAGAA
LOC_Os07g15770
OsAffx.28467.1.S1_at--780--4911Chr07:9150774..9150798 (25 bp)
GCTTCGCCAAAGAACCTGATCAGGA
LOC_Os07g15770
OsAffx.28467.1.S1_at--1003--8831Chr07:9150758..9150782 (25 bp)
TGATCAGGAAGCTGTCGCACCGCCA
LOC_Os07g15770
Target Sequence 
CGCCGTCGCTGTTCAGGAGGAACACCGGCGCCGGCGGGCTCACGTTCGACGTCTCCCTCGGCGAACGGCCCGACCTGGAC
GCCGGGCTCGGCCTCGGCGGCGGCGGCGGCCGGCACGCCGAGGCCGCGGCCAGCGCCACCATCATGTCATATTGTGGGAG
CACGTTCACTGACGCAGCGAGCTCGATGCCCAAGGAGATGGTGGCCGCCATGGCCGATGATGGGGAGAGCTTGAACCCAA
ACACGGTGGTTGGCGCAATGGTGGAGAGGGAGGCCAAGCTGATGAGGTACAAGGAGAAGAGGAAGAAGAGGTGCTACGAG
AAGCAAATCCGGTACGCGTCCAGAAAAGCCTATGCCGAGATGAGGCCCCGAGTGAGAGGTCGCTTCGCCAAAGAACCTGA
TCAGGAAGCTGTCGCACCGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis