Browse Element(s) Details


OsAffx.28469.1.S1_at

Description gb:NM_186969.1
DB_XREF= gi:34901023
TID=OsAffx.28469.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH (P0483E06.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1592011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15880Os.9227.1.S1_a_at11/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15880OsAffx.3846.1.S1_at1/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15890Os.41248.4.S1_x_at1/117+9228610..9233991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15900NANA7+9239530..9241129hypothetical protein
LOC_Os07g15910OsAffx.22387.1.S1_at11/117+9244892..9246132hypothetical protein
LOC_Os07g15920OsAffx.28469.1.S1_at11/117+9248139..9248588hypothetical protein
LOC_Os07g15930OsAffx.28470.1.S1_at11/117+9250697..9254014Legume lectins beta domain containing protein, expressed
LOC_Os07g15940Os.50228.1.S1_at10/117+9258849..9261135receptor like protein kinase, putative, expressed
LOC_Os07g15950OsAffx.22386.1.S1_x_at11/117+9264516..9265010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28469.1.S1_at--414--8411Chr07:9248190..9248214 (25 bp)
GGCCGTTGCCGAACCGTACTGTGGC
LOC_Os07g15920
OsAffx.28469.1.S1_at--861--4091Chr07:9248199..9248223 (25 bp)
CGAACCGTACTGTGGCAGGCACATA
LOC_Os07g15920
OsAffx.28469.1.S1_at--1043--8651Chr07:9248209..9248233 (25 bp)
TGTGGCAGGCACATACGTCCGACAC
LOC_Os07g15920
OsAffx.28469.1.S1_at--688--7091Chr07:9248242..9248266 (25 bp)
GTCACTTCCCTGTACAGTGGGCACT
LOC_Os07g15920
OsAffx.28469.1.S1_at--1024--2111Chr07:9248255..9248279 (25 bp)
ACAGTGGGCACTTGAAGTCGTCATT
LOC_Os07g15920
OsAffx.28469.1.S1_at--448--10791Chr07:9248287..9248311 (25 bp)
TTGTCCACACCGAGCGAGCCGTGGT
LOC_Os07g15920
OsAffx.28469.1.S1_at--883--5731Chr07:9248313..9248337 (25 bp)
GACTGGTGGCAGAGATCCACGCACT
LOC_Os07g15920
OsAffx.28469.1.S1_at--532--3351Chr07:9248330..9248354 (25 bp)
CACGCACTGGCGTGGTCCGTGGCCA
LOC_Os07g15920
OsAffx.28469.1.S1_at--971--7251Chr07:9248387..9248411 (25 bp)
GTCCACGGAACAGGCCGCATGTGCT
LOC_Os07g15920
OsAffx.28469.1.S1_at--1080--8711Chr07:9248483..9248507 (25 bp)
TGTCGAGCAGACTACCGCCAGTGAG
LOC_Os07g15920
OsAffx.28469.1.S1_at--1140--3411Chr07:9248490..9248514 (25 bp)
CAGACTACCGCCAGTGAGCAGGCCA
LOC_Os07g15920
Target Sequence 
GGCCGTTGCCGAACCGTACTGTGGCAGGCACATACGTCCGACACCTCCCTCCGTCACTTCCCTGTACAGTGGGCACTTGA
AGTCGTCATTGTCGCCGTTGTCCACACCGAGCGAGCCGTGGTGGACTGGTGGCAGAGATCCACGCACTGGCGTGGTCCGT
GGCCACCGCCGCTGCCGAGCAGGCCGCGCGCGCCACCGTCCACGGAACAGGCCGCATGTGCTTCGGGCTCCGCCACCGCC
GCCGAGCAGGCCGCGCGCGCTCCGGGCACTGCCACCGAGCAGGCTGCTGCTGCTGTCGAGCAGACTACCGCCAGTGAGCA
GGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis