Browse Element(s) Details


OsAffx.28502.1.S1_at

Description tigr:9635.m01827
TID=OsAffx.28502.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1813011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18110OsAffx.16320.1.S1_at11/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.30891.1.S1_x_at3/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.12244.1.S1_at1/117+10714746..10716928hypothetical protein
LOC_Os07g18120Os.18981.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.18981.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.57307.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_x_at4/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.2.S1_x_at2/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.50754.1.A1_x_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18130OsAffx.28502.1.S1_at11/117+10737453..10742218hypothetical protein
LOC_Os07g18140OsAffx.28503.1.S1_at11/117+10742802..10743391hypothetical protein
LOC_Os07g18154OsAffx.28504.1.S1_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_x_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_at10/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28502.1.S1_at--1051--1471Chr07:10739200..10739224 (25 bp)
AGCAATGCGGAGAGCATTCGCCGGC
LOC_Os07g18130
OsAffx.28502.1.S1_at--395--4591Chr07:10739244..10739268 (25 bp)
GCGACGAGAACGAAACAAGCCCTTA
LOC_Os07g18130
OsAffx.28502.1.S1_at--342--2611Chr07:10739260..10739284 (25 bp)
AAGCCCTTAAAGTGCAACATGCCAT
LOC_Os07g18130
OsAffx.28502.1.S1_at--711--3531Chr07:10739277..10739301 (25 bp)
CATGCCATGATTTTCATTCACCCAT
LOC_Os07g18130
OsAffx.28502.1.S1_at--46--6551Chr07:10739285..10739309 (25 bp)
GATTTTCATTCACCCATTGCTGCCG
LOC_Os07g18130
OsAffx.28502.1.S1_at--130--71Chr07:10739300..10739324 (25 bp)
ATTGCTGCCGCATGCTAGTGATTCG
LOC_Os07g18130
OsAffx.28502.1.S1_at--564--4511Chr07:10739306..10739330 (25 bp)
GCCGCATGCTAGTGATTCGAGGAAA
LOC_Os07g18130
OsAffx.28502.1.S1_at--1153--8891Chr07:10741896..10741920 (25 bp)
TGAGAAGCGGCAGGCGCGACCCACA
LOC_Os07g18130
OsAffx.28502.1.S1_at--393--3211Chr07:10741917..10741941 (25 bp)
CACATGTGCTGCTGTTCCCGACCTA
LOC_Os07g18130
OsAffx.28502.1.S1_at--888--8771Chr07:10741929..10741953 (25 bp)
TGTTCCCGACCTACGCGGCGGAGGT
LOC_Os07g18130
OsAffx.28502.1.S1_at--758--1671Chr07:10741993..10742017 (25 bp)
AGCCGACAGCGAAGACGGAGCTCCT
LOC_Os07g18130
Target Sequence 
AGCAATGCGGAGAGCATTCGCCGGCGGCGAGCGCTGAAAAGCCGGCGACGAGAACGAAACAAGCCCTTAAAGTGCAACAT
GCCATGATTTTCATTCACCCATTGCTGCCGCATGCTAGTGATTCGAGGAAAATGGGCGGAGCAGGGGCGGGAAGAGGGCG
GCGGCGTGAGTGGCGGCGGCGGGCGCAGCTGGGTCGCGAGTGGCTGGCAGTGAGAAGCGGCAGGCGCGACCCACATGTGC
TGCTGTTCCCGACCTACGCGGCGGAGGTGGAGCTCCTAGGGTGGCGGGAGGTTGAGGCGGAGCGGGCAGCCGACAGCGAA
GACGGAGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis