Browse Element(s) Details


OsAffx.28544.2.S1_x_at

Description tigr:9635.m02165
TID=OsAffx.28544.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2285011/11Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os04g243401/11phytase, putative
LOC_Os04g244601/11phytase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22784NANA7+12859119..12859264NA
LOC_Os07g22800NANA7+12862728..12864535retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22810OsAffx.19542.3.S1_x_at2/117+12865619..12866554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22820OsAffx.14826.2.S1_at1/117+12869844..12872325Transposable element protein, putative, Retrotrans_gag
LOC_Os07g22830NANA7+12875247..12875930retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22840OsAffx.16365.1.S1_at11/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22840OsAffx.16365.1.S1_x_at11/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22840OsAffx.23616.1.S1_at1/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22850OsAffx.28544.2.S1_x_at11/117+12883052..12884397Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g22860OsAffx.25936.1.S1_s_at11/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.7.S1_s_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.1.S1_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.2.S1_x_at4/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.5.S1_x_at3/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22870NANA7+12893981..12894424hypothetical protein
LOC_Os07g22880Os.10827.1.S1_x_at7/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22880Os.46055.2.S1_x_at6/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein
LOC_Os07g22920OsAffx.22238.2.S1_at9/117+12908385..12910176hypothetical protein
LOC_Os07g22920OsAffx.22238.1.S1_at2/117+12908385..12910176hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016210molecular_functionnaringenin-chalcone synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28544.2.S1_x_at--658--5631Chr07:12883486..12883510 (25 bp)
GACACCGACAAGACCATCGACGGGC
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--1158--8013Chr04:14003811..14004272 (25 bp)
GGAGGGCATCAAGTTCCAGCTCGGC
LOC_Os04g24460
OsAffx.28544.2.S1_x_at--822--511Chr07:12883408..12883432 (25 bp)
ATCGAGGCCAACGTGGAGGCCTTCT
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--911--8551Chr07:12883395..12883419 (25 bp)
TGGAGGCCTTCTGCCAGAAGCTGAT
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--317--1451Chr07:12883380..12883404 (25 bp)
AGAAGCTGATGCAGGAGCACCCTCA
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--810--971Chr07:12883368..12883392 (25 bp)
AGGAGCACCCTCAGGCGGCGGACAA
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--551--911Chr07:12883356..12883380 (25 bp)
AGGCGGCGGACAAGCTCACCTACGG
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--716--1731Chr07:12883339..12883363 (25 bp)
ACCTACGGCGACATGTTCTGGGCGG
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--156--8431Chr07:12883302..12883326 (25 bp)
GGCCGGCGATCCTGACCAAGATGGA
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--663--1831Chr07:12883212..12883236 (25 bp)
ACGCGAGCAGCAACACCATCGTGTA
LOC_Os07g22850
OsAffx.28544.2.S1_x_at--23--2491Chr07:12883201..12883225 (25 bp)
AACACCATCGTGTACGTGCTGGAGA
LOC_Os07g22850
Target Sequence 
GACACCGACAAGACCATCGACGGGCGGCTGACGGAGGAGGGCATCAAGTTCCAGCTCGGCCGCGAACTCCCCCACATCAT
CGAGGCCAACGTGGAGGCCTTCTGCCAGAAGCTGATGCAGGAGCACCCTCAGGCGGCGGACAAGCTCACCTACGGCGACA
TGTTCTGGGCGGTGCACCCCGGCGGGCCGGCGATCCTGACCAAGATGGAGGGCAGGCTGGGGCTGGACGGCGGGAAGCTC
CGCGCCAGCCGGAGCGCGCTCCGGGACTTCGGGAACGCGAGCAGCAACACCATCGTGTACGTGCTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28544.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis