Browse Element(s) Details


OsAffx.28561.1.S1_at

Description tigr:9635.m02286
TID=OsAffx.28561.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2396011/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23944Os.50392.1.S1_at11/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_x_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.11458.1.S1_s_at1/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23960OsAffx.28561.1.S1_at11/117+13554489..13556567Transferase family protein
LOC_Os07g23970OsAffx.5423.1.S1_at11/117+13565490..13566086expressed protein
LOC_Os07g23980Os.26542.1.A1_at11/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23980OsAffx.25367.1.S1_at1/117+13571774..13575459retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28561.1.S1_at--29--6371Chr07:13555981..13556005 (25 bp)
GATCCACCACGGCATTCGAGCTGCT
LOC_Os07g23960
OsAffx.28561.1.S1_at--547--3971Chr07:13556011..13556035 (25 bp)
CGGTCATGTGGCGATGCCGCACGTC
LOC_Os07g23960
OsAffx.28561.1.S1_at--332--9631Chr07:13556071..13556095 (25 bp)
TCATGTTCACCCTGAATCTACGAGG
LOC_Os07g23960
OsAffx.28561.1.S1_at--393--7591Chr07:13556135..13556159 (25 bp)
GGGCTACTACGGGAACGCGCATCTC
LOC_Os07g23960
OsAffx.28561.1.S1_at--847--9371Chr07:13556218..13556242 (25 bp)
TCGAGCTCATGTGCAGGGCCAAGGC
LOC_Os07g23960
OsAffx.28561.1.S1_at--751--3991Chr07:13556261..13556285 (25 bp)
CGTGGAGTCGATGGTTGATCTCCTG
LOC_Os07g23960
OsAffx.28561.1.S1_at--683--2111Chr07:13556320..13556344 (25 bp)
ACAGGACGTATGAGGTTTCTGACAC
LOC_Os07g23960
OsAffx.28561.1.S1_at--915--7851Chr07:13556333..13556357 (25 bp)
GGTTTCTGACACGAAATGGGTCGGT
LOC_Os07g23960
OsAffx.28561.1.S1_at--982--9671Chr07:13556428..13556452 (25 bp)
TCACCTCGAAGCTGATAAGCTATCA
LOC_Os07g23960
OsAffx.28561.1.S1_at--132--7751Chr07:13556492..13556516 (25 bp)
GGTGTCGATGTTGTTGCCAGAGCCA
LOC_Os07g23960
OsAffx.28561.1.S1_at--908--8811Chr07:13556500..13556524 (25 bp)
TGTTGTTGCCAGAGCCAGCGATGGA
LOC_Os07g23960
Target Sequence 
GATCCACCACGGCATTCGAGCTGCTCACCGCGGTCATGTGGCGATGCCGCACGTCGGCGCTGGGGTACGAGCCCGATCGA
CGCGTGCGCCTCATGTTCACCCTGAATCTACGAGGGAGATGGTGGAGCCGCGAAGAAGAAGCCGCCGTGCCGCCGGGCTA
CTACGGGAACGCGCATCTCTCCCCCATGGTGACGGCCACCGTCGGCGAGCTGGCCCGGCAGCCTCTCGCGGACACCGTCG
AGCTCATGTGCAGGGCCAAGGCCGGCACGACGAGGGAGCGCGTGGAGTCGATGGTTGATCTCCTGGCGACATGGCGGGAG
CGGCCGGCGTTCGCCATGGACAGGACGTATGAGGTTTCTGACACGAAATGGGTCGGTGGAGGAGGCGGTGCGTTGCGCTG
TGGGGTGGCGGAGATGGTCGGCGGCGGCACGCCTTTCGCCGGAGACCTCACCTCGAAGCTGATAAGCTATCACATGAAAT
GCAAGAACGAAAATGGGGAGGACTCGATTGTGGTGTCGATGTTGTTGCCAGAGCCAGCGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28561.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis