Browse Element(s) Details


OsAffx.5423.1.S1_at

Description tigr:9635.m02287
TID=OsAffx.5423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2397011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23944Os.50392.1.S1_at11/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_x_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.11458.1.S1_s_at1/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23960OsAffx.28561.1.S1_at11/117+13554489..13556567Transferase family protein
LOC_Os07g23970OsAffx.5423.1.S1_at11/117+13565490..13566086expressed protein
LOC_Os07g23980Os.26542.1.A1_at11/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23980OsAffx.25367.1.S1_at1/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23990Os.7679.1.S1_at11/117+13587797..13602928tetratricopeptide repeat, putative, expressed
LOC_Os07g23990OsAffx.4222.1.S1_at2/117+13587797..13602928tetratricopeptide repeat, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5423.1.S1_at--461--891Chr07:13565680..13565704 (25 bp)
AGGCCGACGGGATCAAGAGCCGCCT
LOC_Os07g23970
OsAffx.5423.1.S1_at--326--4251Chr07:13565707..13565731 (25 bp)
CCGTCGTCAGGTTCAGCGCCAGCGG
LOC_Os07g23970
OsAffx.5423.1.S1_at--69--6071Chr07:13565971..13565994 (24 bp)
GAGTTTAGCTTAGCTCAATTTAGCT
LOC_Os07g23970
OsAffx.5423.1.S1_at--1060--1551Chr07:13565976..13566000 (25 bp)
AGCTTAGCTCAATTTAGCTTCCAGA
LOC_Os07g23970
OsAffx.5423.1.S1_at--32--4831Chr07:13565982..13566006 (25 bp)
GCTCAATTTAGCTTCCAGATACTTT
LOC_Os07g23970
OsAffx.5423.1.S1_at--102--191Chr07:13565987..13566011 (25 bp)
ATTTAGCTTCCAGATACTTTCAGCA
LOC_Os07g23970
OsAffx.5423.1.S1_at--274--6471Chr07:13565999..13566023 (25 bp)
GATACTTTCAGCAGTTTGGATCTTA
LOC_Os07g23970
OsAffx.5423.1.S1_at--286--5031Chr07:13566009..13566033 (25 bp)
GCAGTTTGGATCTTACTAGCATCTA
LOC_Os07g23970
OsAffx.5423.1.S1_at--1138--7931Chr07:13566016..13566040 (25 bp)
GGATCTTACTAGCATCTACTACCAC
LOC_Os07g23970
OsAffx.5423.1.S1_at--645--451Chr07:13566029..13566053 (25 bp)
ATCTACTACCACCACTAGGCTGTTT
LOC_Os07g23970
OsAffx.5423.1.S1_at--460--9891Chr07:13566032..13566056 (25 bp)
TACTACCACCACTAGGCTGTTTCAC
LOC_Os07g23970
Target Sequence 
AGGCCGACGGGATCAAGAGCCGCCTCCCCGTCGTCAGGTTCAGCGCCAGCGGATCCGGCTCCGACGGGGAGGAGGAGGAC
GGCGCCGCCGCGGAGGCGTCCCCGCGCTGCGCCGTGTGCCTGGCCGCCGTGGAGGAGGGGGCGGAGTTTAGCTTAGCTCA
ATTTAGCTTCCAGATACTTTCAGCAGTTTGGATCTTACTAGCATCTACTACCACCACTAGGCTGTTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis