Browse Element(s) Details


Os.26542.1.A1_at

Description gb:CB633476
DB_XREF= gi:29628465
DB_XREF=OSIIEb12F13.r
CLONE=OSIIEb12F13
TID=Os.26542.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.26542 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2398011/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23944Os.50392.1.S1_at11/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_x_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.11458.1.S1_s_at1/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23960OsAffx.28561.1.S1_at11/117+13554489..13556567Transferase family protein
LOC_Os07g23970OsAffx.5423.1.S1_at11/117+13565490..13566086expressed protein
LOC_Os07g23980Os.26542.1.A1_at11/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23980OsAffx.25367.1.S1_at1/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23990Os.7679.1.S1_at11/117+13587797..13602928tetratricopeptide repeat, putative, expressed
LOC_Os07g23990OsAffx.4222.1.S1_at2/117+13587797..13602928tetratricopeptide repeat, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26542.1.A1_at--970--3412Chr07:13572864..13572888 (25 bp)
CAGAACTTTCTGTCGGTCGGTTTTG
LOC_Os07g23980
Os.26542.1.A1_at--90--1112Chr07:13572908..13572932 (25 bp)
AGTGTTTTGGTCTGTGGTTGCGCAC
LOC_Os07g23980
Os.26542.1.A1_at--45--8613Chr11:1960892..1961111 (25 bp)
TGGTCTGTGGTTGCGCACTGTCCCG
NONE
Os.26542.1.A1_at--1026--1952Chr07:13572931..13572955 (25 bp)
ACTGTCCCGTGCTCCTGTTGTTCTG
LOC_Os07g23980
Os.26542.1.A1_at--721--3872Chr07:13572945..13572969 (25 bp)
CTGTTGTTCTGCTGATGCGCGTGAG
LOC_Os07g23980
Os.26542.1.A1_at--602--8212Chr07:13573054..13573078 (25 bp)
GGAATCAGTTTCCTTCTTTCAGACT
LOC_Os07g23980
Os.26542.1.A1_at--331--10332Chr07:13573070..13573094 (25 bp)
TTTCAGACTTTTTCACGAGTCCCAC
LOC_Os07g23980
Os.26542.1.A1_at--452--1711Chr07:13573093..13573117 (25 bp)
ACCACCTGTGCATGCGGCATTCCTT
LOC_Os07g23980
Os.26542.1.A1_at--522--8292Chr07:13573108..13573132 (25 bp)
GGCATTCCTTCCTTGAGTTCGACTC
LOC_Os07g23980
Os.26542.1.A1_at--564--9631Chr07:13573144..13573168 (25 bp)
TCACGTACATCACAAGGTTCCGAGT
LOC_Os07g23980
Os.26542.1.A1_at--816--2211Chr07:13573155..13573179 (25 bp)
ACAAGGTTCCGAGTTGTATCAAACA
LOC_Os07g23980
Target Sequence 
CAGAACTTTCTGTCGGTCGGTTTTGGTGTTGTGGAGTTGCATNTAGTGTTTTGGTCTGTGGTTGCGCACTGTCCCGTGCT
CCTGTTGTTCTGCTGATGCGCGTGAGGAAGATGGAAGGTAGAGATTAGATTGGTTTGGTTTNTATTTCGGGGCCACGTAG
AAAAGGTAATAAGGAATCAGTTTCCTTCTTTCAGACTTTTTCACGAGTCCCACCACCTGTGCATGCGGCATTCCTTCCTT
GAGTTCGACTCCCTCCTCCAAATCACGTACATCACAAGGTTCCGAGTTGTATCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26542.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis