Browse Element(s) Details


Os.50392.1.S1_at

Description gb:AK121014.1
DB_XREF= gi:37990637
TID=Os.50392.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048A03, full insert sequence.
FL= gb:AK121014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2394411/11Glycosyl hydrolases family 31 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23890OsAffx.5421.1.S1_at11/117+13507791..13509083F-box domain containing protein
LOC_Os07g23900Os.53238.1.S1_at11/117+13511942..13514082F-box domain containing protein, expressed
LOC_Os07g23910NANA7+13515302..13515514hypothetical protein
LOC_Os07g23920Os.47463.1.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23920Os.14491.2.S1_x_at1/117+13517620..13521447transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23930Os.52575.1.S1_x_at10/117+13523440..13531197expressed protein
LOC_Os07g23930Os.46319.1.S1_s_at4/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.30371.1.S1_at2/117+13523440..13531197expressed protein
LOC_Os07g23930OsAffx.5828.1.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23930Os.26733.2.S1_x_at1/117+13523440..13531197expressed protein
LOC_Os07g23944Os.50392.1.S1_at11/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_x_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.16387.1.S1_at10/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23944OsAffx.11458.1.S1_s_at1/117+13533077..13547006Glycosyl hydrolases family 31 protein, expressed
LOC_Os07g23960OsAffx.28561.1.S1_at11/117+13554489..13556567Transferase family protein
LOC_Os07g23970OsAffx.5423.1.S1_at11/117+13565490..13566086expressed protein
LOC_Os07g23980Os.26542.1.A1_at11/117+13571774..13575459retrotransposon, putative, centromere-specific
LOC_Os07g23980OsAffx.25367.1.S1_at1/117+13571774..13575459retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0015926molecular_functionglucosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50392.1.S1_at--489--6731Chr07:13546067..13546091 (25 bp)
GTTCTTCAGCGCCAAATATCCATTT
LOC_Os07g23944
Os.50392.1.S1_at--469--1291Chr07:13546116..13546140 (25 bp)
AGATCGACTCCAGTATTCGAGCAAA
LOC_Os07g23944
Os.50392.1.S1_at--953--5891Chr07:13546146..13546170 (25 bp)
GAGCTGATCATTCTGGTGGGTTTTC
LOC_Os07g23944
Os.50392.1.S1_at--1134--10711Chr07:13546444..13546468 (25 bp)
TTGAGGGTTCGTCCTAGTTTCATTC
LOC_Os07g23944
Os.50392.1.S1_at--654--1191Chr07:13546459..13546483 (25 bp)
AGTTTCATTCTTCAGTACCCTACAG
LOC_Os07g23944
Os.50392.1.S1_at--1099--131Chr07:13546554..13546578 (25 bp)
ATTTGAGGGAGTTCTTCGTCCCAAT
LOC_Os07g23944
Os.50392.1.S1_at--1064--5611Chr07:13546698..13546722 (25 bp)
GACAAACGTACGAATCTGAGCCTGG
LOC_Os07g23944
Os.50392.1.S1_at--171--2251Chr07:13546724..13546748 (25 bp)
AAATTGCTTCGATCTCAGTCAGGTT
LOC_Os07g23944
Os.50392.1.S1_at--389--1511Chr07:13546811..13546835 (25 bp)
AGCAGTTTCTAAGGACACACCGTTA
LOC_Os07g23944
Os.50392.1.S1_at--788--3291Chr07:13546826..13546850 (25 bp)
CACACCGTTAAGAATTTGCCACCAT
LOC_Os07g23944
Os.50392.1.S1_at--1084--7731Chr07:13546981..13547004 (24 bp)
GGTGTATCACCATTTTAGTTATTGC
LOC_Os07g23944
Target Sequence 
GTTCTTCAGCGCCAAATATCCATTTGTAAGGAAAACCCAAAGATTGTTAAGATCGACTCCAGTATTCGAGCAAAACAGGG
AGCTGATCATTCTGGTGGGTTTTCAGGGTTGGCCTGTTTGAGGGTTCGTCCTAGTTTCATTCTTCAGTACCCTACAGAGG
TTTCTGTTGTGTTTACAGCAAGCAACGGTATAAAGCGAGAAATACTTCCAGATTCTGGAGAATTGACATTTGAGGGAGTT
CTTCGTCCCAATGGGGAATGGATGCTAGTTGACAAACGTACGAATCTGAGCCTGGTAAATTGCTTCGATCTCAGTCAGGT
TAGTATATGTAAGTTGCATTGGGGAACTGATCATTTGAACATGGAACTGTGGTCGGAGCAAAGAGCAGTTTCTAAGGACA
CACCGTTAAGAATTTGCCACCATTATGAGGTGAGAAAAATAAACTAAATCCTTGAATGCACATGGAGCAGAAATAGGATG
ACTATCAAGGGACTTGTTTCCTGAACTATTTTACCCAATAAATGTAAACTGAACCGAGTAATGCCACAGTAAAGGTGTAT
CACCATTTTAGTTATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis